G343671


Basic Information

Item Value
gene id G343671
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 14076457 ~ 14078541 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU407094
AGAAAGTTTGTAAAGTTGTATCAgagatgaaaattaaaaactaatgGTTTGGTGGATAatggtttattttaaattactttaatgGACTGGAGTGATTTGGAGGAGAACAGCCTGAAATTGTTCAGAAGTGTGCATGAAagagtaaatatttattttagtttattgtaACAGCCGCCTTTTGAGCACTTATAAACAGCTCAACATCGGCTCTAACAGTTAGCTCTTTTTAACACACAAATTAGCgtgtttatgtaaataaatcagGCTACTCACAGGCCATTTGCGTCGACGCAGTGGCACTTTGCATATAACTGACAGGTTACTTTGACGACTTCGTCCCTGCAGCACCGTCAGcttttatctttatttctcAGTGAACTAAAGTGTCCGAGTCCACGCAGCGCCGCTAACCGAGACGACTTCACTAGATTTGGGAACTTTTTAAACTCCTTTAGTGACTTTAAGTCAGATTGAACGTGTTGCGCTTGCAATCAATCAGTTTCacgacgaccaatcactgatccccgTTGTTTCacgacgaccaatcactgatccccgTTGTTTCacgacgaccaatcactgatcaccagtttGTCCCGCCCTCACActtgttcattttaaactctcttcttatAACGTTTTTTGTCTGCGTTCCTGAtacaaactacatttttttaGAACCgtgtaaaagttttatttatccACGGTGCCACGACCAAAGACGACTTCtttatacaagaaaaaaaaaattaaagaaatcaCCGATAATCTACAATTCTCTATTGGGATAAAACTCTTATATGCTACTCTTTTATATTCTAAGTGAAAACCTTCAGCATTTACtctaatttgtaatttgatgcGCCAATCACCATgacgaataaatgaatatgcaaatgagtagGTGACGTCACCCGgtcgacttttttttttgagcgtGTAAACTTTCCTACTttctactttcccctgaaaagagccTGAAGCACCGTGTCCATGTGGAGCAGAAgagcacatgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagtgagtgagtgtgttggAGTTAAAGGAGGCTAAAAACACGCACAATACGCACACATTCGCCatttctcctctctccctctctctttaaaaaaaaaaaaaacacagtgaatgGTTGATTTCCTCGACTCCTCCTTGAGCACTACATTTCTTCCTGTCGTCCTTTTCTCCCAGAGTAAAGACGCGGGAGTGAGACAGCCAGCACAAAGTGCTAACTAGCACGCTAAAGCTAAGGCTAAGAGAGTGCTGGAGCTGTGCAGGTGCCCATGTGTCTGGCCTGGCCGCCTTCCAACCCGGAGCACTACCGCGGCTAGCTAACACATTAACCCGACGGCTAACCCCTGAGGCTTTCTCCTCCTCGGCTTCAGCGCTGGATGAGTGAATATACCcggacactgacactaacaacCCCCGTGTGTTTGACTgtattgaatataaaataagcACGGACGCTTGAACAGAAACTTCAGCGCTAGCGGTTAGTGCAGTCCCAGTGAGCGTGTGCGGAACAGTTAGCCTAGCTAGCTACCTAGCCTACACATTTCACTGTCCTAGCGAGCGCCAGGTCTATTGTCCCGGAGTGCCATTACTTTCTACTCAGCTTTATATTTCTACGGATAACATTTCAGGAGGTGGTGACAAAAGAGCTGAGGGTTACCTGTGAACCACCTCACTAATCATCCGAGCAGCTCAGGccgcaaaaaaaaagaaagagtagGCCGCAAAAATGTCTCCGCcgacaaaacacacaaaaacatcccAAGTTTCAGCCAACTTCCCAACAACTGCAGTGTGCCCTGAAAAATGCGCTCTTAGTTACCTGCTGGCCCTTGGCATAAGGTTTAGAAACGATGTGATATCGTCTTGTTCTGATTTTCCCTCCTCCTGTGGCCGCCATggctaaatcacacacacatccacacacacacgcacacacactgagtgttaGCTCACTGCGCCGGAGAGCGCTCTCGTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU407094 True 2023 lncRNA 0.44 2 14076457 14078541

Neighbor

gene id symbol gene type direction distance location
utp23 utp23,LOC102791607 coding upstream 48476 14024374 ~ 14027981 (+)
lrrc14b lrrc14b coding upstream 946068 13126153 ~ 13130389 (+)
LOC113535917 LOC108256774 coding upstream 951178 13115196 ~ 13125279 (+)
gatad1 gatad1 coding upstream 965756 13106863 ~ 13110701 (+)
lypla2 lypla2,lypa2 coding upstream 974367 13095231 ~ 13102090 (+)
stmnd1 stmnd1 coding downstream 22828 14101369 ~ 14108436 (+)
rbm24a rbm24,rbm24a,LOC107696536,LOC105905339,LOC107706227 coding downstream 32882 14111423 ~ 14121598 (+)
cap2 cap2 coding downstream 50352 14128893 ~ 14158705 (+)
vps28 vps28,LOC107592928,LOC107696523,LOC107754273 coding downstream 87358 14165899 ~ 14170688 (+)
mapk15 mapk15 coding downstream 93246 14171787 ~ 14183687 (+)
G343620 NA non-coding upstream 82138 13969234 ~ 13994319 (+)
G343522 NA non-coding upstream 309856 13763084 ~ 13766601 (+)
G342836 NA non-coding upstream 774654 13301539 ~ 13301803 (+)
G342735 NA non-coding upstream 928611 13147045 ~ 13147846 (+)
LOC117595825 NA non-coding upstream 1389244 12684133 ~ 12687213 (+)
G343690 NA non-coding downstream 81296 14159837 ~ 14161453 (+)
G343723 extl1,LOC102196503,LOC101464589,LOC102793765 non-coding downstream 249653 14328194 ~ 14329982 (+)
G343841 NA non-coding downstream 467058 14545599 ~ 14545807 (+)
G343846 NA non-coding downstream 543965 14622506 ~ 14622728 (+)
G343847 NA non-coding downstream 547022 14625563 ~ 14625822 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other upstream 995228 13077170 ~ 13081229 (+)
si:ch211-199g17.2 NA other upstream 1121732 12904623 ~ 12954725 (+)
LOC113536228 nobox other upstream 1283984 12785837 ~ 12792473 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other upstream 1380945 12692007 ~ 12695512 (+)
sostdc1b LOC108257373 other upstream 2261184 11810109 ~ 11815273 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other downstream 127180 14205721 ~ 14231844 (+)
med30 med30,LOC107706236,LOC107754270,LOC107654723 other downstream 154976 14233517 ~ 14250931 (+)
tnrc18 tnrc18,LOC107581723,LOC107742388 other downstream 1280252 15358793 ~ 15421748 (+)
G344364 actb2,actb,actbb,actb1,LOC102799139,LOC103039558,LOC107581721 other downstream 1355581 15434122 ~ 15484581 (+)
micall2a micall2 other downstream 2638930 16717471 ~ 16732200 (+)

Expression


Co-expression Network