G411282


Basic Information

Item Value
gene id G411282
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 10708174 ~ 10709657 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU488167
AACAACTGTAGGATAAGATCAtaaataatctatttttttatctactctctctctctctctctctctcgtcatCTGCCGTACATTTAACTCCTGCTGAACGTGATGTTGGCTCCAGATTCTGAGACATTTCTACCGGTGTGGCTCTTCTCAtcctctggacctgcctgattcatcctaaTGTTCTGCTTTCTCCATCTGCTGCTGTGCTCCCTCATGAATACGCTCAAGacttgcacttcccaaaaattTAATTCTCAGTTCATGCACAAGTCTTACCCTTTCTTCAGCAGATAATCCCACAAGCATACCGTAGACGTGTACCCAAGACCTGCGGCTTTAATCCTAATGATGGCCCATCCTCCTTTCGACACACTTAGAACTCTTTAACTTTATAATATACACCTGTAGAACAGTAAGAATTTAGATTTCCTTCATCTGGTGTAACCCGGAGGAGGATGGGGTCCCTTCTGAGTCTTCCTCGTGttgtctcggggagtttttccttgccactgtcgtctctgacttgctcattagggatctaaatctacagcTGGACTtccataaagctgctttgtggtaatgtctattgttaaactTACACATAAATCTGAACTGAAGTGAATTACATTTGGTAGATGTGACATCGGGTGTAACAAAGCATTAAACAGAATTAGCAATCTGCTCACTCGGCTTTACTCCAACTCCTCTAGTGCCTGAAGCATAACTGCATatagttagatttttttgttttagcattttatatagCCAATTTTAGCATAGTAGTTTAGTACTTTATGTGGTAGGGTTGAGCAAGTCTatctcatattttatttaataaatgggGAAAGAAATGACAGTTAGCAGAGTTGCGGCACTATGACTGAGATAATCATGATCTGTACCTAGTACTGTAATAAGGTAGGCAATCTCTATCAGGTTTCCTTTATCAAAAATTAATCTCATCTTGCGATGTTGCTTGgagccctgtgatggactagtgtCCCATTTACTgtgactttaaataaaatggttactgaagatgaatgaatgaatctagCGTTTGTCTCTGCTACCCAGTGAATAAAGTGCTTTGCTTCTGTTAATAGTTACAAACAACAGACTGTGTGAACAGTAACGCCTACGTAAAATTGGTGGCATTGGGGGTATGTTCTCTCTGTTTAGACaggtttattaattattaaattgtgACACTCGTGAGTAAGGCATAGTCTTGATCACTTCATGACAGACAGTATTTATCTCTTAAATGGAATGATGTTATGcatttagttatgctgtcacagctagtcttgccagagtccctgcttgcactctgcacacaatgtacattgtccttaaccattac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU488167 True 1366 lncRNA 0.40 2 10708174 10709657

Neighbor

gene id symbol gene type direction distance location
ccnk ccnk,LOC107560198,LOC107555300,LOC107678663,LOC107679687 coding upstream 60294 10634301 ~ 10647880 (+)
cad cad coding upstream 76820 10603450 ~ 10631354 (+)
stxbp5a stxbp5a,stxbp5,LOC107696120,LOC107710208,LOC107679494,LOC107726399,LOC108436475 coding upstream 156414 10477436 ~ 10551760 (+)
adgb LOC108279018 coding upstream 242106 10426805 ~ 10466068 (+)
rab32a rab32,rab32a,LOC107679502,LOC107601480,LOC107696121 coding upstream 287352 10397606 ~ 10420822 (+)
mia3 mia3 coding downstream 16795 10726452 ~ 10750967 (+)
brox brox,LOC107710643,LOC107732498,LOC107704042,LOC107568230 coding downstream 56950 10766607 ~ 10773928 (+)
taf1a NA coding downstream 68055 10777712 ~ 10787597 (+)
dusp10 dusp10 coding downstream 82410 10792067 ~ 10811069 (+)
slc30a2 slc30a3,slc30a2 coding downstream 138570 10848227 ~ 10867766 (+)
G411029 NA non-coding upstream 140596 10563583 ~ 10567578 (+)
G411024 snw1,LOC107681047,LOC107662182 non-coding upstream 151157 10554029 ~ 10557017 (+)
G410937 NA non-coding upstream 347697 10292057 ~ 10360477 (+)
G410929 NA non-coding upstream 459853 10165578 ~ 10248321 (+)
G410953 NA non-coding upstream 510685 10193385 ~ 10197489 (+)
LOC117596550 NA non-coding downstream 130985 10840642 ~ 10842387 (+)
G411304 LOC108259151 non-coding downstream 184436 10894093 ~ 10896035 (+)
LOC113529302 NA non-coding downstream 356037 11065694 ~ 11068855 (+)
G411395 NA non-coding downstream 360314 11069971 ~ 11074310 (+)
G411398 NA non-coding downstream 368068 11077725 ~ 11086823 (+)
armc2 armc2 other upstream 412969 10235981 ~ 10295205 (+)
afg1lb lace1 other upstream 477367 10197716 ~ 10230807 (+)
G410936 snx3 other upstream 525502 10178049 ~ 10182672 (+)
LOC113529148 NA other upstream 1603950 9098377 ~ 9104224 (+)
G409600 NA other upstream 2829629 7877795 ~ 7878545 (+)
G411297 NA other downstream 54557 10764214 ~ 10764729 (+)
aig1 aig1,LOC107675100,LOC107689442,LOC106607822 other downstream 405916 11115573 ~ 11153005 (+)
txlnba txlnb other downstream 680843 11390500 ~ 11418204 (+)

Expression


Co-expression Network