rab32a (rab32,rab32a,LOC107679502,LOC107601480,LOC107696121)


Basic Information

Item Value
gene id rab32a
gene name rab32,rab32a,LOC107679502,LOC107601480,LOC107696121
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 10397606 ~ 10420822 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918118.2
CATGTATTTTGGATTGAGCCACAAGGATTTCCTCGTGCCAGATATTTTCCGGGTCCTGTGACTTATCAGGTGGTTTGTGgtgaaggaggagaggagaagaaaagagaggagaagaaaagagaggagaggagatttttttttttgtattttttaatggttttattaaGTCACTGAGTCAGTGTGAGAGTCAGTGTGAACTCACTTCTACATACTGAACTTTGTGAGGTGGAGAAACGGGAAGCTCTTGTTTTGTTGAATTGTTCTCCTTTCAGCTGCACAGCATTTTGTCTTAACAGTGACAGTACCAGTAACACTaccagtagcagtagcagtaccagtaccagtagcAGGATGGCTGGAGGCTCCGTGTCGGAGTGTAAGGAGTATTTGTTTAAAGTTTTGGTGATTGGGGAGTTAGGTGTGGGGAAAACCAGCATCATTAAACGGTATGTCCATCAGCTTTTCTCCCAGCACTACAGAGCAACAATTGGTGTTGACTTCGCCCTCAAAGTCCTCAACTGGGACAGCAAAACGTTAGTGCGGCTGCAGTTATGGGACATCGCAGGTCAGGAGCGCTTTGGGAACATGACCAGAGTGTACTACAAGGAGGCAGTGGGAGCGTTTGTGGTGTTCGACGTGACCAGAAGCTCCACGTTCGAAGCGGTGTCAAAGTGGAAGCACGACTTGGACAGCAAGGTGAAACTAGCGAATGGCAACCCCATCCCCTCCGTCCTGCTGGCTAATAAATGCGACCAGAAGAAAGACGGCTCTAATAACGCCTCCATTATGGACAACTTCTGCAAGGAGGCCGGCTTCCTGGGCTGGTTTGAGACATCAGCCAAGGATGACATAAATGTCGACGAGGCAGCCCGGTTCCTGGTGGAGCACATTCTGCTCAACGACAAAGGCGTTCCGTACGAAGAGAGCAACGGTGACCGCATCAAGCTGCATCAAGAGGCCATGCCTGCGGAGAGCAAGTCAGGGTGCTGCTAGCGTCTAGGCCTCAATCTCTCCATTCACCTGCCACAAAGGAGGGGTTGTTGGCTACAGACTGAGACCCAGAAGCCCCACCATCATGTCCTCCACTTCCTTCCATTCATCTGCATCCATCATGCCATTCTGAATCCAATGGCACAAGCACGTCTTGGCGTACGAGTCTTGGCTCTCCACGGGTGAAACCATAGCCATGGAGATTATGCCTAGTATAGTGACCattcatctctttctctgtcaatCTCCCCATGTCTCTCTCTGGCTCAACATTGCTCATATaagatgtttatatttgttGCCTTCAGTAGTGTCAGGTGGTTTGGGATATGTCATCTTGTTGAGATAAGTGCAACCCTATGGGTGTCATAGGAGGCTGTACCAAGTACATGTTTGTTATATACAAATtaagactgatttttttttttttttttt

Function

symbol description
rab32a Predicted to enable GTPase activity. Acts upstream of or within notochord cell vacuolation. Predicted to be located in Golgi apparatus; membrane; and vesicle. Predicted to be active in melanosome; mitochondrion; and trans-Golgi network. Is expressed in several structures, including Kupffer's vesicle; axial mesoderm; neural crest; retinal pigmented epithelium; and shield. Orthologous to human RAB32 (RAB32, member RAS oncogene family).
rab32 Enables several functions, including AP-1 adaptor complex binding activity; AP-3 adaptor complex binding activity; and BLOC-2 complex binding activity. Involved in several processes, including endosome to melanosome transport; melanosome assembly; and phagosome maturation. Located in several cellular components, including cytoplasmic vesicle; mitochondria-associated endoplasmic reticulum membrane; and mitochondrial outer membrane.

NR:

description
PREDICTED: ras-related protein Rab-32-like isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07918 RAB32; Ras-related protein Rab-32

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918118.2 True 1425 mRNA 0.47 3 10397606 10420822

Neighbor

gene id symbol gene type direction distance location
grm1a grm1,grm1a,LOC108279026,LOC108436473,LOC107679500,LOC107726479,LOC107696122 coding upstream 1575 10375398 ~ 10396031 (+)
cep57l1 cep57l1 coding upstream 46319 10344322 ~ 10351287 (+)
foxo3b foxo3,LOC108436468 coding upstream 133776 10233916 ~ 10263830 (+)
nr2e1 nr2e1,LOC107726424,LOC107726614,LOC107602776,LOC107601200 coding upstream 222485 10167281 ~ 10175121 (+)
nbas nbas,LOC108439588,LOC108442060 coding upstream 550646 9659527 ~ 9846960 (+)
adgb LOC108279018 coding downstream 5983 10426805 ~ 10466068 (+)
stxbp5a stxbp5a,stxbp5,LOC107696120,LOC107710208,LOC107679494,LOC107726399,LOC108436475 coding downstream 56614 10477436 ~ 10551760 (+)
cad cad coding downstream 182628 10603450 ~ 10631354 (+)
ccnk ccnk,LOC107560198,LOC107555300,LOC107678663,LOC107679687 coding downstream 213479 10634301 ~ 10647880 (+)
mia3 mia3 coding downstream 305630 10726452 ~ 10750967 (+)
G410937 NA non-coding upstream 37129 10292057 ~ 10360477 (+)
G410929 NA non-coding upstream 149285 10165578 ~ 10248321 (+)
G410953 NA non-coding upstream 200117 10193385 ~ 10197489 (+)
G410916 NA non-coding upstream 285464 10110230 ~ 10112142 (+)
G410885 NA non-coding upstream 290100 10104839 ~ 10107506 (+)
G411024 snw1,LOC107681047,LOC107662182 non-coding downstream 133207 10554029 ~ 10557017 (+)
G411029 NA non-coding downstream 142761 10563583 ~ 10567578 (+)
G411282 NA non-coding downstream 287352 10708174 ~ 10709657 (+)
LOC117596550 NA non-coding downstream 419820 10840642 ~ 10842387 (+)
G411304 LOC108259151 non-coding downstream 473271 10894093 ~ 10896035 (+)
armc2 armc2 other upstream 102401 10235981 ~ 10295205 (+)
afg1lb lace1 other upstream 166799 10197716 ~ 10230807 (+)
G410936 snx3 other upstream 214934 10178049 ~ 10182672 (+)
LOC113529148 NA other upstream 1293382 9098377 ~ 9104224 (+)
G409600 NA other upstream 2519061 7877795 ~ 7878545 (+)
G411297 NA other downstream 343392 10764214 ~ 10764729 (+)
aig1 aig1,LOC107675100,LOC107689442,LOC106607822 other downstream 694751 11115573 ~ 11153005 (+)
txlnba txlnb other downstream 969678 11390500 ~ 11418204 (+)

Expression


Co-expression Network