LOC117596550


Basic Information

Item Value
gene id LOC117596550
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 10840642 ~ 10842387 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577605.1
TCCTCTAGCTTCTCTGCAAGATTTCGTTACCAAGTCGCTTGACACTATTATATCAAAAAAACACCATGCTTTAAGTGACGTATTTTATGAACAGGATCTAGATCGATAGGATTTGATATCGATACTCTGTCCCTAAGCTATTTAAACAGATCCATCAGAAATGCCTTGGTAGCACATCACTGGACCAATCTTTATCTGGGCAAAGCTACAAAGCATTGTTCCATGCAGGGCAAGAGAGAGTCCATGGACTTGAGAACCCCTCAGATTGAGCCCCTCACATGGCATTTTATATTGGTGCAGGTGAGGGAGTACAAACCTTCCTTCAAGTCCACTCCAGGAATCCACACACAAGCCCAGAGAAGATCGGAGCCTCATGTGAGTAAGGCTCTCATCATATGGACAGTAACGAGCAGTCCGTGGCTTTAGAAGAGGCTGGATGATCAGTACGCAGGAGAAATTCACGACCCCAGAGTGTGTGAACAGAGTTTCAGCGCAGAGCTTCTCTCACCTGTCTGATCTGGAAGCACGCTGCTCCACCTCGTCTCCATCTTCCTTCTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577605.1 True 560 lncRNA 0.46 3 10840642 10842387

Neighbor

gene id symbol gene type direction distance location
dusp10 dusp10 coding upstream 29573 10792067 ~ 10811069 (+)
taf1a NA coding upstream 53045 10777712 ~ 10787597 (+)
brox brox,LOC107710643,LOC107732498,LOC107704042,LOC107568230 coding upstream 66714 10766607 ~ 10773928 (+)
mia3 mia3 coding upstream 89675 10726452 ~ 10750967 (+)
ccnk ccnk,LOC107560198,LOC107555300,LOC107678663,LOC107679687 coding upstream 192762 10634301 ~ 10647880 (+)
slc30a2 slc30a3,slc30a2 coding downstream 5840 10848227 ~ 10867766 (+)
LOC117596571 NA coding downstream 74717 10917104 ~ 10928916 (+)
stum stum,si:dkeyp-59a8.4,LOC107602214,LOC107675050,LOC107598101,LOC106607833 coding downstream 90944 10933331 ~ 10949568 (+)
coq8aa coq8a,adck3,LOC107716623,LOC107727627,LOC107602173 coding downstream 147295 10989682 ~ 11016779 (+)
pex3 pex3,LOC107727657,LOC107689441,LOC107716471,LOC107675099 coding downstream 326388 11168775 ~ 11177446 (+)
G411282 NA non-coding upstream 130985 10708174 ~ 10709657 (+)
G411029 NA non-coding upstream 273064 10563583 ~ 10567578 (+)
G411024 snw1,LOC107681047,LOC107662182 non-coding upstream 283625 10554029 ~ 10557017 (+)
G410937 NA non-coding upstream 480165 10292057 ~ 10360477 (+)
G410929 NA non-coding upstream 592321 10165578 ~ 10248321 (+)
G411304 LOC108259151 non-coding downstream 51706 10894093 ~ 10896035 (+)
LOC113529302 NA non-coding downstream 223307 11065694 ~ 11068855 (+)
G411395 NA non-coding downstream 227584 11069971 ~ 11074310 (+)
G411398 NA non-coding downstream 235338 11077725 ~ 11086823 (+)
G411394 NA non-coding downstream 244757 11087144 ~ 11107151 (+)
G411297 NA other upstream 75913 10764214 ~ 10764729 (+)
armc2 armc2 other upstream 545437 10235981 ~ 10295205 (+)
afg1lb lace1 other upstream 609835 10197716 ~ 10230807 (+)
G410936 snx3 other upstream 657970 10178049 ~ 10182672 (+)
LOC113529148 NA other upstream 1736418 9098377 ~ 9104224 (+)
aig1 aig1,LOC107675100,LOC107689442,LOC106607822 other downstream 273186 11115573 ~ 11153005 (+)
txlnba txlnb other downstream 548113 11390500 ~ 11418204 (+)

Expression


Co-expression Network