pex3 (pex3,LOC107727657,LOC107689441,LOC107716471,LOC107675099)


Basic Information

Item Value
gene id pex3
gene name pex3,LOC107727657,LOC107689441,LOC107716471,LOC107675099
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 11168775 ~ 11177446 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917443.2
AAGTCAGGTGTGAGTCAGGTGTGATAGCCTCTCTGACGTCAGTTTGTCTGAggttattaatgttgtcctgtAACACCAAACCCTAGAGTGTAGTCACAGCACAGCAGTGTTTAGAGGGAGGGATTTGGAGGGATCTGGCAGCCGGGTCAGTGATCTGCAGCTcgtgctgtgagagctgctagCTCTGTCTCAAACTTACTCCTGCGCTTCACCTTCAGCGGCTCTGAGGATCCGGGCTGGGGTTTGTTTAAAACATGTTATCTTCTACATGGAACTTCGTCAAGCGTCATAAAAAGAAGTTTATTTTCGCTGGAGCTTTTGCtggagGTGTGTACCTGCTCGGGAAATATGCCCAGAGAAAACTCCAGGAGATGCAGGAGCGTGAGACGGCGGAGTACATCGCTCAGGCTCGGAGGCAGTTCCACTTCGAGAGTAACCAGAGGACGTGTAACATGACGGTGTTGTCCTTGCTCCCCACCCTGAGAGAGGCGATCATACACCACCTGAACTCCGAGAGTCTCACGGCACTGCTGAAGTCCAGGCCAGCTAACAAGATCGAGATTTGGGAGGATCTTAAGACAATCAGTTTTACTCGAAGCATTGTGGCTGTTTATAGTACCTGCATGCTGGTGGTGTTACTTCGTGTTCAGCTCAATATAATCGGTGGCTACTTGTACCTGGACAACTCAGTAACTAAAAATGGAACGACGCCTTTGGCTCCTCCTGAAGTCCAACAGAAGTATCTGTCAAGTATCCAGCACCTTCTGGGAGACGGGCTGATTGAGCTGATAACCGTGGTGAAGAAAGCAGTGCAGGAAATCCTAGCACCGATCTCTTTGAAGCAGAGTCTGTCTCTGCAGGAGCTAGAGCAGCACATAATTCAGATCAGACAGCTAGTGGAGGAAGACTCTGGCTCGTCCAAATTCAGACCGCTGTCCTGGTACATGATGCCTGATGAGGAGAACACGCTAGCTGATCAGGCTTGCGGTCTGACGGAGAATGACGTCACAACAATAAAGCTACTAAACGAAACCAGGGACATGCTTGAGAACCCAGATTTCAGTACCATACTCAGCGCTTGCCTGAATCGGGGCTTCAGCCGTTTTCTTGACAACATGGCGGAGTTTTTTTGCCCCCGTCAAGGAGACTCCACCCCCAGCAGCACACCTGATAGTCTCTTACATGTAAGTCTCCCACTCGCCAAAATAATTCCCATCGCCAATGGACAGATTCACTCGATATGCAGTGAAGTCCCCAGTCAGTTTGTTCAGGATCTTTTAATGACGGAACAAGTGAAAGAATTTGCAGCCAATGTTTATGAAGCTTTCAGCAACCCTCATGAACTGCAGAAGGGGAAAACGTACACTTGGTGGAAAGCTGTGTCGTGAATGGCTTGCCGTTTCTCCCTGTGAACCTGGATGACTTTTTCTTCCCCAAGTTATAACTGATGATTGTTAATGGTTGGAGCTCTGTTTTCATCactggtcttttttttccctttgattttccttgattttcttcctaatttagacagctctcctctatcacacGACAGCCACCATCCAGGGAGGGCGAAGGCTATCACGCGCTTCCTTCCGAGGCCAGTCGACTGCCtgttttcgaactgctgctcatgtaaCGTCAGGGGGCGGCGTAACACACCTGGAGGAAAATGCTATCCGCCTACTTccgcatacacgagctcacgGACGCCCGTGATTGGctattgataggggagagaaaCTCTCAAGGTCTTTTTCAaaccatacattttttttcacagttaagCTGGAGAATGGCCTGTTTTCTTGTCATTTTCTTAAAAGCccagaaaaccttttttttttgttttgttttgttttgttttgttctgtcttATCTCTGAACAGCATTCCATGCACCTATATCAGCTCCAGAACACAGCAAGGGAGTTGATACAGAACGTGTGAAAATGGTGGACTGGATTGATCATTTCTGATTAGAGCTTGGGTTGGCCTGATTCTTAGACAAAGTTCAAGCCTAAAAAGTGCTGTCAGCTGTGACTTTCTGGATTTTCTATCGAGCTGTGAGACTGAGTGTGCTCAGTGTTGCAGGCACTAGGTTTTAGATGGTAGATGCTGCATGATCCAAACCTCAGTtcttttggtttaattttttttttaaccaaacctGCAAACCTGAAATCATCaaattaattgtaataaatgtGATGACTTTTCGCTAACATAAACAGTAAGTATAATAGGAAAAACAAAGAGGGACTAACTGAATCTTAACTTATTGACACTACtgaagaatattaaaaataaacgcAAACAAATTCTTATccttgaaaaataaaagattactGTTACTGTG
>XM_026917444.2
TCAGGTGTGAGTCAGGTGTGATAGCCTCTCTGACGTCAGTTTGTCTGAggttattaatgttgtcctgtAACACCAAACCCTAGAGTGTAGTCACAGCACAGCAGTGTTTAGAGGGAGGGATTTGGAGGGATCTGGCAGCCGGGTCAGTGATCTGCAGCTcgtgctgtgagagctgctagCTCTGTCTCAAACTTACTCCTGCGCTTCACCTTCAGCGGCTCTGAGGATCCGGGCTGGGGTTTGTTTAAAACATGTTATCTTCTACATGGAACTTCGTCAAGCGTCATAAAAAGAAGTTTATTTTCGCTGGAGCTTTTGCtggagGTGTGTACCTGCTCGGGAAATATGCCCAGAGAAAACTCCAGGAGATGCAGGAGCGTGAGACGGCGGAGTACATCGCTCAGGCTCGGAGGCAGTTCCACTTCGAGAGTAACCAGAGGACGTGTAACATGACGGTGTTGTCCTTGCTCCCCACCCTGAGAGAGGCGATCATACACCACCTGAACTCCGAGAGTCTCACGGCACTGCTGAAGTCCAGGCCAGCTAACAAGATCGAGATTTGGGAGGATCTTAAGACAATCAGTTTTACTCGAAGCATTGTGGCTGTTTATAGTACCTGCATGCTGGTGGTGTTACTTCGTGTTCAGCTCAATATAATCGGTGGCTACTTGTACCTGGACAACTCAGTAACTAAAAATGGAACGACGCCTTTGGCTCCTCCTGAAGTCCAACAGAAGTATCTGTCAAGTATCCAGCACCTTCTGGGAGACGGGCTGATTGAGCTGATAACCGTGGTGAAGAAAGCAGTGCAGGAAATCCTAGCACCGATCTCTTTGAAGCAGAGTCTGTCTCTGCAGGAGCTAGAGCAGCACATAATTCAGATCAGACAGCTAGTGGAGGAAGACTCTGGCTCGTCCAAATTCAGACCGCTGTCCTGGTACATGATGCCTGATGAGGAGAACACGCTAGCTGATCAGGCTTGCGGTCTGACGGAGAATGACGTCACAACAATAAAGCTACTAAACGAAACCAGGGACATGCTTGAGAACCCAGATTTCAGTACCATACTCAGCGCTTGCCTGAATCGGGGCTTCAGCCGTTTTCTTGACAACATGGCGGAGTTTTTTTGCCCCCGTCAAGGAGACTCCACCCCCAGCAGCACACCTGATAGTCTCTTACATGTAAGTCTCCCACTCGCCAAAATAATTCCCATCGCCAATGGACAGATTCACTCGATATGCAGTGAAGTCCCCAGTCAGTTTGTTCAGGATCTTTTAATGACGGAACAAGTGAAAGAATTTGCAGCCAATGTTTATGAAGCTTTCAGCAACCCTCATGAACTGCAGAAGTAAACGCTGTTTAATGTGAGGTCAAATTCCTGAATCTACAAAGAGCAATACAGCACAACGTTCCCTTAATCTCTCATCTTACAGGGGGAAAACGTACACTTGGTGGAAAGCTGTGTCGTGAATGGCTTGCCGTTTCTCCCTGTGAACCTGGATGACTTTTTCTTCCCCAAGTTATAACTGATGATTGTTAATGGTTGGAGCTCTGTTTTCATCactggtcttttttttccctttgattttccttgattttcttcctaatttagacagctctcctctatcacacGACAGCCACCATCCAGGGAGGGCGAAGGCTATCACGCGCTTCCTTCCGAGGCCAGTCGACTGCCtgttttcgaactgctgctcatgtaaCGTCAGGGGGCGGCGTAACACACCTGGAGGAAAATGCTATCCGCCTACTTccgcatacacgagctcacgGACGCCCGTGATTGGctattgataggggagagaaaCTCTCAAGGTCTTTTTCAaaccatacattttttttcacagttaagCTGGAGAATGGCCTGTTTTCTTGTCATTTTCTTAAAAGCccagaaaaccttttttttttgttttgttttgttttgttttgttctgtcttATCTCTGAACAGCATTCCATGCACCTATATCAGCTCCAGAACACAGCAAGGGAGTTGATACAGAACGTGTGAAAATGGTGGACTGGATTGATCATTTCTGATTAGAGCTTGGGTTGGCCTGATTCTTAGACAAAGTTCAAGCCTAAAAAGTGCTGTCAGCTGTGACTTTCTGGATTTTCTATCGAGCTGTGAGACTGAGTGTGCTCAGTGTTGCAGGCACTAGGTTTTAGATGGTAGATGCTGCATGATCCAAACCTCAGTtcttttggtttaattttttttttaaccaaacctGCAAACCTGAAATCATCaaattaattgtaataaatgtGATGACTTTTCGCTAACATAAACAGTAAGTATAATAGGAAAAACAAAGAGGGACTAACTGAATCTTAACTTATTGACACTACtgaagaatattaaaaataaacgcAAACAAATTCTTATccttgaaaaataaaagattactGTTACTGTG
>XM_026917445.2
AGTCAGGTGTGAGTCAGGTGTGATAGCCTCTCTGACGTCAGTTTGTCTGAggttattaatgttgtcctgtAACACCAAACCCTAGAGTGTAGTCACAGCACAGCAGTGTTTAGAGGGAGGGATTTGGAGGGATCTGGCAGCCGGGTCAGTGATCTGCAGCTcgtgctgtgagagctgctagCTCTGTCTCAAACTTACTCCTGCGCTTCACCTTCAGCGGCTCTGAGGATCCGGGCTGGGGTTTGTTTAAAACATGTTATCTTCTACATGGAACTTCGTCAAGCGTCATAAAAAGAAGTTTATTTTCGCTGGAGCTTTTGCtggagGTGTGTACCTGCTCGGGAAATATGCCCAGAGAAAACTCCAGGAGATGCAGGAGCGTGAGACGGCGGAGTACATCGCTCAGGCTCGGAGGCAGTTCCACTTCGAGAGTAACCAGAGGACGTGTAACATGACGGTGTTGTCCTTGCTCCCCACCCTGAGAGAGGCGATCATACACCACCTGAACTCCGAGAGTCTCACGGCACTGCTGAAGTCCAGGCCAGCTAACAAGATCGAGATTTGGGAGGATCTTAAGACAATCAGTTTTACTCGAAGCATTGTGGCTGTTTATAGTACCTGCATGCTGGTGGTGTTACTTCGTGTTCAGCTCAATATAATCGGTGGCTACTTGTACCTGGACAACTCAGTAACTAAAAATGGAACGACGCCTTTGGCTCCTCCTGAAGTCCAACAGAAGTATCTGTCAAGTATCCAGCACCTTCTGGGAGACGGGCTGATTGAGCTGATAACCGTGGTGAAGAAAGCAGTGCAGGAAATCCTAGCACCGATCTCTTTGAAGCAGAGTCTGTCTCTGCAGGAGCTAGAGCAGCACATAATTCAGATCAGACAGCTAGTGGAGGAAGACTCTGGCTCGTCCAAATTCAGACCGCTGTCCTGGTACATGATGCCTGATGAGGAGAACACGCTAGCTGATCAGGCTTGCGGTCTGACGGAGAATGACGTCACAACAATAAAGCTACTAAACGAAACCAGGGACATGCTTGAGAACCCAGATTTCAGTACCATACTCAGCGCTTGCCTGAATCGGGGCTTCAGCCGTTTTCTTGACAACATGGCGGAGTTTTTTTGCCCCCGTCAAGGAGACTCCACCCCCAGCAGCACACCTGATAGTCTCTTACATGTAAGTCTCCCACTCGCCAAAATAATTCCCATCGCCAATGGACAGATTCACTCGATATGCAGTGAAGTCCCCAGTCAGTTTGTTCAGGATCTTTTAATGACGGAACAAGTGAAAGAATTTGCAGCCAATGTTTATGAAGCTTTCAGCAACCCTCATGAACTGCAGAAGTAAACGCTGTTTAATGGGGAAAACGTACACTTGGTGGAAAGCTGTGTCGTGAATGGCTTGCCGTTTCTCCCTGTGAACCTGGATGACTTTTTCTTCCCCAAGTTATAACTGATGATTGTTAATGGTTGGAGCTCTGTTTTCATCactggtcttttttttccctttgattttccttgattttcttcctaatttagacagctctcctctatcacacGACAGCCACCATCCAGGGAGGGCGAAGGCTATCACGCGCTTCCTTCCGAGGCCAGTCGACTGCCtgttttcgaactgctgctcatgtaaCGTCAGGGGGCGGCGTAACACACCTGGAGGAAAATGCTATCCGCCTACTTccgcatacacgagctcacgGACGCCCGTGATTGGctattgataggggagagaaaCTCTCAAGGTCTTTTTCAaaccatacattttttttcacagttaagCTGGAGAATGGCCTGTTTTCTTGTCATTTTCTTAAAAGCccagaaaaccttttttttttgttttgttttgttttgttttgttctgtcttATCTCTGAACAGCATTCCATGCACCTATATCAGCTCCAGAACACAGCAAGGGAGTTGATACAGAACGTGTGAAAATGGTGGACTGGATTGATCATTTCTGATTAGAGCTTGGGTTGGCCTGATTCTTAGACAAAGTTCAAGCCTAAAAAGTGCTGTCAGCTGTGACTTTCTGGATTTTCTATCGAGCTGTGAGACTGAGTGTGCTCAGTGTTGCAGGCACTAGGTTTTAGATGGTAGATGCTGCATGATCCAAACCTCAGTtcttttggtttaattttttttttaaccaaacctGCAAACCTGAAATCATCaaattaattgtaataaatgtGATGACTTTTCGCTAACATAAACAGTAAGTATAATAGGAAAAACAAAGAGGGACTAACTGAATCTTAACTTATTGACACTACtgaagaatattaaaaataaacgcAAACAAATTCTTATccttgaaaaataaaagattactGTTACTGTG

Function

symbol description
pex3 Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in protein import into peroxisome membrane. Predicted to act upstream of or within peroxisome organization. Predicted to be integral component of peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder and peroxisome biogenesis disorder 10A. Orthologous to human PEX3 (peroxisomal biogenesis factor 3).

NR:

description
peroxisomal biogenesis factor 3

GO:

id name namespace
GO:0007031 peroxisome organization biological_process
GO:0005779 integral component of peroxisomal membrane cellular_component

KEGG:

id description
K13336 PEX3; peroxin-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917443.2 False 2358 mRNA 0.46 13 11168775 11177446
XM_026917444.2 True 2440 mRNA 0.45 12 11168778 11177446
XM_026917445.2 False 2373 mRNA 0.46 13 11168776 11177446

Neighbor

gene id symbol gene type direction distance location
coq8aa coq8a,adck3,LOC107716623,LOC107727627,LOC107602173 coding upstream 151996 10989682 ~ 11016779 (+)
stum stum,si:dkeyp-59a8.4,LOC107602214,LOC107675050,LOC107598101,LOC106607833 coding upstream 219207 10933331 ~ 10949568 (+)
LOC117596571 NA coding upstream 239859 10917104 ~ 10928916 (+)
slc30a2 slc30a3,slc30a2 coding upstream 301009 10848227 ~ 10867766 (+)
dusp10 dusp10 coding upstream 357706 10792067 ~ 10811069 (+)
atf3 atf3,LOC107727668,LOC107553464 coding downstream 10052 11187498 ~ 11191610 (+)
flvcr1 flvcr1,LOC106512207 coding downstream 46854 11224300 ~ 11232036 (+)
galnt14 galnt14,LOC108274857,LOC108429358,LOC107676246,LOC107716567,LOC107727639 coding downstream 58814 11236260 ~ 11259403 (+)
angel2 angel2 coding downstream 84632 11262078 ~ 11271041 (+)
ehd3 ehd3,LOC108258807,LOC108429356,LOC107727655,LOC107675095,LOC107716590 coding downstream 96477 11273923 ~ 11290201 (+)
G411423 NA non-coding upstream 885 11167681 ~ 11167890 (+)
G411414 NA non-coding upstream 13981 11154579 ~ 11154794 (+)
G411394 NA non-coding upstream 61624 11087144 ~ 11107151 (+)
G411398 NA non-coding upstream 81952 11077725 ~ 11086823 (+)
G411395 NA non-coding upstream 94465 11069971 ~ 11074310 (+)
G411427 NA non-coding downstream 856 11178302 ~ 11179406 (+)
G411438 NA non-coding downstream 26680 11204126 ~ 11205628 (+)
G411667 NA non-coding downstream 135937 11313383 ~ 11313598 (+)
G411693 NA non-coding downstream 199610 11377056 ~ 11377275 (+)
G411729 NA non-coding downstream 221613 11399059 ~ 11427527 (+)
aig1 aig1,LOC107675100,LOC107689442,LOC106607822 other upstream 15770 11115573 ~ 11153005 (+)
G411297 NA other upstream 404046 10764214 ~ 10764729 (+)
armc2 armc2 other upstream 873570 10235981 ~ 10295205 (+)
afg1lb lace1 other upstream 937968 10197716 ~ 10230807 (+)
G410936 snx3 other upstream 986103 10178049 ~ 10182672 (+)
txlnba txlnb other downstream 213054 11390500 ~ 11418204 (+)

Expression


Co-expression Network