G411438


Basic Information

Item Value
gene id G411438
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 11204126 ~ 11205628 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU488357
actttgcTCTCATGCAGTTTTTTAAATGCTCTTATTTCTAATGAACTTGTGTTGGATTTTTATTGGATATCAGATGCAGACATGAGCCTTTAAAGTCAGACATTTGAATATAAAcgtttcatttacaaaaaaaaaaaaaaaaggaaactgatATACAAATGAAAGAATTTTAACACTATGATGAGAGgctatagagtaaataatctacatacatacatatatttacactatatggccaaaagtatgtgcacccctgaccatcacattgaacgtctcatttcagatttattcccctgtgtttgctgttataatgagctccactcttctgggaagctttccactagatgttggagcgtggctgtggggatttgtgttcattcagctacaagagcattagtgaggtcaggcgctgatgttgggtaaggagtctccagttccagttcccaaaggtgttcagtggggttgaggtcagggctctgtgcaggacactcgagttcttccactccaaccttcacacaccatgtcttcatggagctcgctttgtgcacaggggcattgtcatgctggaacaggtttcagtctcttagttccagtgaagggaaactgtaaagctacagcacacagagacattctatataattgtgtgtttcagactttgtggtaacagtttggggaagaaccacatgtgggtgtgagggtcaggggtgcacatactagAGAACCAACAGGAAACTTATACAAACACAGGGGGTGTGTGTGAAACTCTTCACAGAAAATCAACCACTAAATTTGTCGCCAAAACACTGTTACCTGTCTttatacacgcacacatgctcacacacgcgcacacacacgctcacacacacacaaccagctCAACAAGAGAACTAAGCAGTTCTGAAATGGTGACGAAACTGAGAGGAGGTTAGACTTTGAGTTTAGTGAACTTTAACAGACATTTTTACaggcaataaaacacacaggagcAGAATCATTCCATACAAAACTGGAGCtggattaacacacacacacacacacacacacacactcttattgatgtggagtgtgtggactCATAGGAACGTATTGCATGCTGTATTCTGTCTCAGACACAGCTCTTTTGATGGTGTGTCTGTGAGCAGGTTCGCTGCTGCGCCGGACTTCAGAACGTTTTCCGTCGGCGCTGGTGAACACGTCTCTGTAGGCCTCCAGCGTCTCGGCCGAGGGCTGCGTGTTCAGCACCTGGTGAAGACCTTCTGCCTTCTGCTTCACGTCCTTCAGAGCCTGCAGGCCaaagagcaacacacacagaagcacaggcttcattatatattttatacaacaaCATTAATCCACTTCATTCATTAGAAAATCAAAGTGAAGTAGtgacatatacactcactggccactttattaagaacacctgctcattcaacCAAGTATCCAATAACTGCATGAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU488357 True 1461 lncRNA 0.43 2 11204126 11205628

Neighbor

gene id symbol gene type direction distance location
atf3 atf3,LOC107727668,LOC107553464 coding upstream 12516 11187498 ~ 11191610 (+)
pex3 pex3,LOC107727657,LOC107689441,LOC107716471,LOC107675099 coding upstream 26680 11168775 ~ 11177446 (+)
coq8aa coq8a,adck3,LOC107716623,LOC107727627,LOC107602173 coding upstream 187347 10989682 ~ 11016779 (+)
stum stum,si:dkeyp-59a8.4,LOC107602214,LOC107675050,LOC107598101,LOC106607833 coding upstream 254558 10933331 ~ 10949568 (+)
LOC117596571 NA coding upstream 275210 10917104 ~ 10928916 (+)
flvcr1 flvcr1,LOC106512207 coding downstream 18672 11224300 ~ 11232036 (+)
galnt14 galnt14,LOC108274857,LOC108429358,LOC107676246,LOC107716567,LOC107727639 coding downstream 30632 11236260 ~ 11259403 (+)
angel2 angel2 coding downstream 56450 11262078 ~ 11271041 (+)
ehd3 ehd3,LOC108258807,LOC108429356,LOC107727655,LOC107675095,LOC107716590 coding downstream 68295 11273923 ~ 11290201 (+)
si:ch211-202p1.5 LOC108274101 coding downstream 98437 11304065 ~ 11309872 (+)
G411427 NA non-coding upstream 24720 11178302 ~ 11179406 (+)
G411423 NA non-coding upstream 36236 11167681 ~ 11167890 (+)
G411414 NA non-coding upstream 49332 11154579 ~ 11154794 (+)
G411394 NA non-coding upstream 96975 11087144 ~ 11107151 (+)
G411398 NA non-coding upstream 117303 11077725 ~ 11086823 (+)
G411667 NA non-coding downstream 107755 11313383 ~ 11313598 (+)
G411693 NA non-coding downstream 171428 11377056 ~ 11377275 (+)
G411729 NA non-coding downstream 193431 11399059 ~ 11427527 (+)
LOC117596530 NA non-coding downstream 216295 11421923 ~ 11428728 (+)
G411804 NA non-coding downstream 279229 11484857 ~ 11525675 (+)
aig1 aig1,LOC107675100,LOC107689442,LOC106607822 other upstream 51121 11115573 ~ 11153005 (+)
G411297 NA other upstream 439397 10764214 ~ 10764729 (+)
armc2 armc2 other upstream 908921 10235981 ~ 10295205 (+)
afg1lb lace1 other upstream 973319 10197716 ~ 10230807 (+)
G410936 snx3 other upstream 1021454 10178049 ~ 10182672 (+)
txlnba txlnb other downstream 184872 11390500 ~ 11418204 (+)

Expression


Co-expression Network