G411804


Basic Information

Item Value
gene id G411804
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 11484857 ~ 11525675 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU488825
ctagaatggacacaactgctgttctcagagggtcttctggattatcaaaatgaatattaaagtctccaacaattaatgctttgtctaaagaaacaaccaggttagagatgaaatccgcaaattcacacaggaattcagaatatggccctgggggtctgtaaataataattactggaatcacctgggtagacttatttttagtggctacgtatgttatgttagaataaagaacttcaaatgcgttgaatttatgactagGTTTtggtgtgacggctagattatcattataaatgactgcgacgcctcctcctttgccagttagacggggctgatgtatgtaactgtacccgggaggactagcttcatttaatgctacaaactcgtttggtttaatccacgtttctgttaaacacagtacatcaaactcctgatcagtaatggtttcattaacaataagcgctttagacgtaagagatctaatattcaacagtcctagcttcagatcaacggtgctggctatgcattcggtatggtttaattttatgttaattagattactaaaacaaactgtctgagtatgtctataattttgtttagctcggggaacagacacagtctcaatacggtggaacctaagtgacgactcagtgcagctagcagacggtcggtttagcctgcttgtctgctccctggccttggccctggattgtcaccgattaactaggcctgttctgagactatgtgctatgctgcaagaaatgagagcagcaccttcccgagtgggatggacaccgtcccgccctaacaggccagccttgccctcaaagttagtccaattatctatattgtcttatttgactgat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU488825 True 863 lncRNA 0.42 3 11484857 11525675

Neighbor

gene id symbol gene type direction distance location
LOC113528726 NA coding upstream 3228 11473675 ~ 11481629 (+)
ptrhd1 ptrhd1 coding upstream 51319 11430780 ~ 11433538 (+)
si:ch211-202p1.5 LOC108274101 coding upstream 174985 11304065 ~ 11309872 (+)
ehd3 ehd3,LOC108258807,LOC108429356,LOC107727655,LOC107675095,LOC107716590 coding upstream 194656 11273923 ~ 11290201 (+)
angel2 angel2 coding upstream 213816 11262078 ~ 11271041 (+)
LOC117596609 NA coding downstream 90761 11616436 ~ 11619152 (+)
LOC117596530 NA non-coding upstream 56129 11421923 ~ 11428728 (+)
G411729 NA non-coding upstream 57330 11399059 ~ 11427527 (+)
G411693 NA non-coding upstream 107582 11377056 ~ 11377275 (+)
G411667 NA non-coding upstream 171259 11313383 ~ 11313598 (+)
G411438 NA non-coding upstream 279229 11204126 ~ 11205628 (+)
G411889 NA non-coding downstream 188375 11714050 ~ 11714256 (+)
txlnba txlnb other upstream 66653 11390500 ~ 11418204 (+)
aig1 aig1,LOC107675100,LOC107689442,LOC106607822 other upstream 331852 11115573 ~ 11153005 (+)
G411297 NA other upstream 720128 10764214 ~ 10764729 (+)
armc2 armc2 other upstream 1189652 10235981 ~ 10295205 (+)
afg1lb lace1 other upstream 1254050 10197716 ~ 10230807 (+)

Expression


Co-expression Network