LOC113528726


Basic Information

Item Value
gene id LOC113528726
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 11473675 ~ 11481629 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301838.1
TAATCCAGGACAGGAGCTCTTGGTGTGGTATGAAGAGAAATATGCCAGAGATCTAGGCCCTACGTTTGACCAGCTCTGGAATAAAAAGTGCTCTGCAAATGAAATAATTGAAGCTCGGTTCCAAATCTTCTCCTGCTCCTTGTGCACACTTTCCTATACATCTCAAATTTACctcaacaaacacataaagaGATGCCACTACGAGGAGTATGTGAGACTGCAGAAATCAGGAGAGTTTAAATATGAGATTCAGATACCTACAAAAGGTTCCAGTTGTCAGCAAACATCATCTGGTACTCTCAGTTCAGACACGTCTCCCAGAGAAATGCAGAAGGAAGTTCACCACTGCTCAGACTGTGGAAAGAGCTTTGCTGATCAGAGTGCTCTACAGCGACACCAGCACAATCCCACAgcagagaagccgtatcactgctcacagtgtggaaagcgTTTTATTAGAATGGGTTATCTTCTACGACACCAGCGCGATCACaaaggagagaagccgtatcaatGCTCACATTGTGGAAAGTGTTTTAACAGAACGTGTTATCTTAAACGACACctgcgcattcacacaggagagaagccgtatcactgcttacagtgtgggaagagttttaatcaaAACGTTGTTCTTCTacaacaccagcgcattcacacaggagagaaaccatatcactgctcagagtgtggAAAGAATTTCTCTCAAAACGGTGCTCTTAAAAGACACCAGCGTATTCACACAGGCGAGAAGCCATATCTATGcgcacagtgtgggaagagttttactacATGGAGCAATCTCCAAACACATCAGTGCACTCACACAATAGaaaagccgtatcactgctcacagtgtggaaagagttttaagCGAAAGGCTGATCTTCAGacacaccagcgcattcacactggaGTGAAACCATATttctgctcacagtgtggaaagaatTTTACTCTGCAGCGAAGTCTTCAACTACACCTGCGCaatcacacaggagagaagccgtatcactgctcagagtgtggaaagagtttcaATCAAAAGATTGATCTTGTACGACACCAGAGCATTCACACAGatgttttgaactctccagtATTATCTGACACCACCTCTCAGCTGGACTTGTGGGGCAACTTCACTTTCTGCAAAGAATGGGGAATggtttgagttcattaatatggcATAGACTTGGTTCAAAAACACTTCTACCTCTGAGACACTTTTAGTCATTCACTCAtcatttcagctctgtgagcttcaccttttatggagttttgtgacCTGCAAGTGCACTAACACTGAGCCATTATACAAAGTGAATTTGTCAAAGTAAGTATGATTATTGTGTTGGCTTAAAATGATGTATGTAgatgtttctttttaattgtttttattatttttattattttttttattctttcggTCATTCACAGCAAGCTACTGTAAGCTCAGATGCATTCTGTTTGCTTTGactattttgaaatgtctcTAGAACTTGACTGGAGTCTACCTGTGGCAGATTCAATTGATTGAacatgatttagaaaggcacacacctgcgTTTATAAGGtcccacaattcacagtgcatgtcagaCAAAAGTAGGCATGGTTAATATCATCcctactgtgaagcatggtggtggcagcctCATGGTGGAGTGCATACAACCTCAGACTGGGGTGGACGTTTAACTTTCAGCATcacaacgacccaaagcatacagccAAGACAATGCTGGAGTGGCTTCAGGGAAaagtctctgaatgtccttgagtggcccagccaaagcccagacttgaaCCCCATAAAACATCTGTGGAGAGACATGAAGATTGCAGTCCACAGATGTTCCCTATCCAGGCTGATTAAGCTTGAGAGAATCTACCAGGAATAATTAgagaaactgcccaaatccaGTTGTGCAAAGTAGCTGTAATAGCTGTCAAAGCTGTAATTGTGGTTTATTGTGTGTAGCTTGATGGCCAAAAAGTAATGTGTGTTAAAACTCAAGTGGGCTAAAAACTTTTCGAAGCCACTGTATATTGAAATTCTGTGGAAGGCAGAGCATTTTTTGTTCACAGAGTGATTTAGTATTCTTATTTTAATGTTTGCTTTTGAACTTAAGtatccataaaataaaatgcataaattctTTGCATTCATAAATTTCTAATTCAACATTATTGTCACTGTAGTAACAAGTGCAGCATAAGAATAAAGCAGAGGTGGTGGGATACCATGACTTGTTTTAGCTCATACAAGAAATGCCTATACCATATAAGGTCATTTACTCAAGTTTACACTAGCCAACATTTTGATGTTGTTTTGATTGCAAACAGAGTAATAAAAGTTTCTTTTTA

Function

GO:

id name namespace
GO:1901265 nucleoside phosphate binding molecular_function
GO:0036094 small molecule binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko05168 Herpes simplex virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301838.1 True 2373 mRNA 0.41 3 11473675 11481629

Neighbor

gene id symbol gene type direction distance location
ptrhd1 ptrhd1 coding upstream 40137 11430780 ~ 11433538 (+)
si:ch211-202p1.5 LOC108274101 coding upstream 163803 11304065 ~ 11309872 (+)
ehd3 ehd3,LOC108258807,LOC108429356,LOC107727655,LOC107675095,LOC107716590 coding upstream 183474 11273923 ~ 11290201 (+)
angel2 angel2 coding upstream 202634 11262078 ~ 11271041 (+)
galnt14 galnt14,LOC108274857,LOC108429358,LOC107676246,LOC107716567,LOC107727639 coding upstream 214272 11236260 ~ 11259403 (+)
LOC117596609 NA coding downstream 134807 11616436 ~ 11619152 (+)
LOC117596530 NA non-coding upstream 44947 11421923 ~ 11428728 (+)
G411729 NA non-coding upstream 46148 11399059 ~ 11427527 (+)
G411693 NA non-coding upstream 96400 11377056 ~ 11377275 (+)
G411667 NA non-coding upstream 160077 11313383 ~ 11313598 (+)
G411438 NA non-coding upstream 268047 11204126 ~ 11205628 (+)
G411804 NA non-coding downstream 3228 11484857 ~ 11525675 (+)
G411889 NA non-coding downstream 232421 11714050 ~ 11714256 (+)
txlnba txlnb other upstream 55471 11390500 ~ 11418204 (+)
aig1 aig1,LOC107675100,LOC107689442,LOC106607822 other upstream 320670 11115573 ~ 11153005 (+)
G411297 NA other upstream 708946 10764214 ~ 10764729 (+)
armc2 armc2 other upstream 1178470 10235981 ~ 10295205 (+)
afg1lb lace1 other upstream 1242868 10197716 ~ 10230807 (+)

Expression


Co-expression Network