flvcr1 (flvcr1,LOC106512207)


Basic Information

Item Value
gene id flvcr1
gene name flvcr1,LOC106512207
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 11224300 ~ 11232036 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917503.2
CCCAATCGACAACGTCATCAAGGCGAGACCAATAAGAAGTCTTGTGGGCGTGGTCATGGGTGGGCTGCTCAGGAAACACAGCACGCCGCATCCCGTCATCACACGCAGTAAGTCCGCGCTGAGACTTGAATATTTTAGAGCCGGGATCAGACAGGAACAATGCGGAGCTCATGGCGGTGTTAGTGCTCGGTTTAACTGGGTAGAAGGCAGCGTGTTCAGCAGCCCGGAGTGGCGGATGTGATTAGAGAGAGGCGAGCGAGCGCGTGGTGATCATGGTGGCGGGGGAGATGGTGCAGGAGCCCGTGAGGCGCGGGGACACACCTGCCCCTGGCGGAGGCAGCAGCGCGGATCTGTGCGCCAGCGTGGACGAGTGCGCGGTGAGGGAGGTGCAGGAGCCGGACCCCGAGCCTCCTCCCGCAGAGAGCCACGCCATGCTCCCCGCAGAGCAGCAGAAACCTCTCCACACCAGGCTGTACCGCAGGCGCTTCGCAGTGCTCGCCATCTTCAGCCTGTACTCCCTGCTCAACGCCTTCCAGTGGATCCAGTACAGCATCATCACCAACGTCTTCACGCACTTCTACAGCGTCACCAACCTGATGATAGACTGGCTGTCGGTGGTCTACATGCTGGCGTACATCCCGCTCATCTTCCCCGCTACCTGGCTGCTGGACCGGGCAGGGCTGCGGGTCACTGCGCTGCTCGGCGCCGGACTCAACTGCGCAGGCGCGTGGCTGAAGTGCGCGAGCGCCGGGCCCGGGCTGTTCTGGGTCACCATGGCGGCGCAGGGCGTCTGCTCTGTGGCCCAGGTCTTCATCCTCGGCCTGCCCTCCAGAATCGCGTCCGTGTGGTTCGGCCCGAGAGAGGTGTCCACTGCCTGTGCTGCTGCCGTGCTGGGAAACCAGctgggcGTGGCTATAGGGTTTCTGCTGCCACCTGTCCTGGTCCCTAACACACCAGATGATAAAGATCTGATGGCCCACAATATAAGTATAATGTTCTATGGGACAGCTGCCATCTCGACCGTGCTCTTCATTTTAACAGTCATTGtcattCAAGACAGACCCCCTGTACCCCCAAGCCAAGCTCAGGCGGTGTTGCCCACGGGCCTAGCAGAAGATTATTCCTATAAACAGTCCATCATTAATCTATTCAAGAGCAAGCCGTTCGTCCTGCTCCTGCTGAGTTACGGCATCATGACCGGATCGTTCTATTCAGTGTCCACGCTCCTCAACCAGATGATCATCAGTCATTATGAGGGAGAGGAGCTGAACGCAGGCAGAATCGGCCTCACCCTGGTCGTGGCTGGAATGGTAGGCTCCATCCTTTGCGGGCTGTGGCTGGATCATACGAAAACCTACAAAATGACGACGCTGATCGTGTACGTTCTCTCCTTCGTCGGCATGCTGGTGTTCACCTTCACGCTGGACCTGGGCCATCTACTCGTGGTCTTCTTCACGGGAGGAGTACTTGGGTTTTTTATGACCGGATACCTGCCCATTGGTTTCGAATTTGCTGTTGAAATCACCTACCCAGAGTCCGAAGGCACTTCATCCGGTCTTCTTAATGCTTTCGCTCAGTTGTTTGGAATCATCTTCACGTTAATTCAAGGGAAGCTCACCACAGACTACAACCCGCTGGCCGGAAACATCTTCCTGTGTGCCTGGATATTCATCGGCATCATTCTAACAGCGTTGATAAAATCAGAGCTGAAAAGACATGATGTCAACATGGGCAATAGATGTCAGGCGGTTCCTACTGAGTGTCCTGTGGAGAAGGTGTCCAACGGTGTAAAGCTGGATTTCTCGTCGGATTTCTCACCCGAGACCACACTGTAAGCCCACTGAGGCCGGAGACTGTGCTACACTCcacctccactcctccaccttcacctccacacctccacctccacacctccacctccacaccTTCACCTCCACAACATCTTCGCAGACCCAACCAAGCTTACTTGAATTTCCTGTACTGTAATTCTTTACGGGATTGTTGAAGCTGCTGAGTAAGCTTTAATAccattatctgtatttgtatctgtatctgtttagcgCTTAAAACATTCctatctgttttcatatttaaaccagaagtgggcgtggtccataaatttattattat

Function

symbol description
flvcr1 Predicted to enable heme binding activity and heme transmembrane transporter activity. Acts upstream of or within erythrocyte differentiation and heme metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to human FLVCR1 (FLVCR heme transporter 1).

NR:

description
feline leukemia virus subgroup C receptor-related protein 1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08220 FLVCR, SLC49A1_2; MFS transporter, FLVCR family, feline leukemia virus subgroup C receptor-related protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917503.2 True 2130 mRNA 0.55 10 11224300 11232036

Neighbor

gene id symbol gene type direction distance location
atf3 atf3,LOC107727668,LOC107553464 coding upstream 32690 11187498 ~ 11191610 (+)
pex3 pex3,LOC107727657,LOC107689441,LOC107716471,LOC107675099 coding upstream 46854 11168775 ~ 11177446 (+)
coq8aa coq8a,adck3,LOC107716623,LOC107727627,LOC107602173 coding upstream 207521 10989682 ~ 11016779 (+)
stum stum,si:dkeyp-59a8.4,LOC107602214,LOC107675050,LOC107598101,LOC106607833 coding upstream 274732 10933331 ~ 10949568 (+)
LOC117596571 NA coding upstream 295384 10917104 ~ 10928916 (+)
galnt14 galnt14,LOC108274857,LOC108429358,LOC107676246,LOC107716567,LOC107727639 coding downstream 4224 11236260 ~ 11259403 (+)
angel2 angel2 coding downstream 30042 11262078 ~ 11271041 (+)
ehd3 ehd3,LOC108258807,LOC108429356,LOC107727655,LOC107675095,LOC107716590 coding downstream 41887 11273923 ~ 11290201 (+)
si:ch211-202p1.5 LOC108274101 coding downstream 72029 11304065 ~ 11309872 (+)
ptrhd1 ptrhd1 coding downstream 198744 11430780 ~ 11433538 (+)
G411438 NA non-coding upstream 18672 11204126 ~ 11205628 (+)
G411427 NA non-coding upstream 44894 11178302 ~ 11179406 (+)
G411423 NA non-coding upstream 56410 11167681 ~ 11167890 (+)
G411414 NA non-coding upstream 69506 11154579 ~ 11154794 (+)
G411394 NA non-coding upstream 117149 11087144 ~ 11107151 (+)
G411667 NA non-coding downstream 81347 11313383 ~ 11313598 (+)
G411693 NA non-coding downstream 145020 11377056 ~ 11377275 (+)
G411729 NA non-coding downstream 167023 11399059 ~ 11427527 (+)
LOC117596530 NA non-coding downstream 189887 11421923 ~ 11428728 (+)
G411804 NA non-coding downstream 252821 11484857 ~ 11525675 (+)
aig1 aig1,LOC107675100,LOC107689442,LOC106607822 other upstream 71295 11115573 ~ 11153005 (+)
G411297 NA other upstream 459571 10764214 ~ 10764729 (+)
armc2 armc2 other upstream 929095 10235981 ~ 10295205 (+)
afg1lb lace1 other upstream 993493 10197716 ~ 10230807 (+)
G410936 snx3 other upstream 1041628 10178049 ~ 10182672 (+)
txlnba txlnb other downstream 158464 11390500 ~ 11418204 (+)

Expression


Co-expression Network