nr2e1 (nr2e1,LOC107726424,LOC107726614,LOC107602776,LOC107601200)


Basic Information

Item Value
gene id nr2e1
gene name nr2e1,LOC107726424,LOC107726614,LOC107602776,LOC107601200
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 10167281 ~ 10175121 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918403.2
GCACACATCACAAAGTCAGCGAGGCTTCAGGCTGCCGGGCATTTCTtagctcgtgtgtgtgtgtgtgttatgtgtgtacgagtgtgtgtgtgtgtgtgtgtttgtgtatgttttttcccccacttgGCTTTTGGTTCCTGTGTGAGGTTTGGGAAGGTGCCtgggcgcacacacacaccggtaCATGCAGCGGTTTTTCGCTGGAGAACCTGCCTGACCAGCCCTCGGATCTTAACAAGATCAGTCGACAATCTGCTCCAACTCATCTGAAGTCCGGATTCTGGTGATcctgaagaggaggagagaggggaaaaaaaggatctGCAACCAGAAAGAAGCCTTGAGTAATCCTGtgggtaaaaaaagaaagaaagaaagaaagaaaaaatcagAGACTGAAGCGACCTGCCTGCATAATCACCCAACACGTATACAGACTGCTTCAATTAGtgcagaaacaaaaaagaaaagaaaaaaaaaagtttgttgtAAATTTCTTGATCTGAAAATCTCTGAGGCTGAAAGAGTTTGGCAATATCAGAAGGCCAGGATGAGCAAAGCTGCCAGTTCAACAAGTGGCTGTTTGGATATTTTAAACGTCAAATCCAgtcgGATTCTGGATATCCCGTGCAAGGTGTGTGGAGACCGAAGTTCAGGGAAACACTACGGAGTTTACGCATGTGATGGATGCTCGGGATTCTTCAAGAGGAGCATACGGAGGAACAGGACGTACGTGTGCAAATCTGGCACTCAGGGAGGCTGCCCAGTGGACAAGACGCACCGGAACCAGTGTCGCGCGTGTCGCTTGAAGAAGTGCCTAGAAGTGAACATGAATAAAGATGCCGTGCAGCACGAGCGAGGCCCAAGAACATCGACCATCCGCAAGCAAGTGGCGCTTTACTTTCGGGGCCACAAGGAGGTGAACGGATCCTCCTCGCACTTTCCCAGCACGTCCATCCCCGGGCTGCACTTCTTCACCACAGTCACTCAACTCGAGACTCACAGTCTGGAATTAAACACGGTGCCGAGCACACCAGAGCGCCAGGGCATGGTGGGGCTCGCGCAGCCCACTCCTAAATATCCCCATGAAGTCAGCGGTGCACCCATGTATCTGTACGAAGTGGCCACGGAGTCTGTGTGTGAATCGGCCGCGCGCCTCCTGTTCATGAGCATCAAATGGGCCAAGAGCGTTCCTGCTTTCTCCACACTCCCTTTACAAGATCAGTTGATCCTATTAGAGGACGCCTGGAGAGAGCTGTTCGTCCTGGGTGTAGCGCAGTGGTCCATCCCAGTGGACTCAAACACCCTGCTTGCAGTTTCAGGGATGACCACAGAAAACACGGAGTCCCAGAGGCTAAACAAGGTGGTGTCAGAGATCCAGGCGCTGCAGGAAGTGGTGACGCGTTTCCGGCAGCTGCGACTGGACGCGACGGAATTCGCGTGCCTCAAGTGCATCGTTACCTTTAAAGCCGTTCCGACGCACAGTGGAGCTGAACTGAGGAGCTTTCGAAACGCCAGCGCCATCGCAGCACTCCAGGACGAAGCACAGCTCACACTCAACAGCTACATCCACACCAGGTACCCGACTCAGCCGTGCCGCTTCGggaagctgctgctgcttttgcCTGCGCTGCGTTCAGTCAGCGCGTCTACAATTGAAGAAGTGTTCTTCAGGAAGACGATCGGAAACGTGCCCATCACACGGCTTCTCTCTGACATGTACAAATCAAGTGACATATGAACGTCTTATTTCCACCCaacaggacagaaaaaaaaaaaaaaaagctggtctGGGAAAGTGACACACTGTCTCAGGCCAAGTAACAAAAGTGACTTACGATATGATTATATCGTAATGTACAAGAGAGAACGGCTATAATGGTTCTGGAAACATCTCCATGCCACCTCTAAAGCAGACGGCATAAAAGACAGCATTTCTAGTGGGAGAAACTCTAAACTATAAAGACTGTGGTGGCTGAACAAGTTCTGTTCACtggttaggaaaaaaaaaatgttacactgTGGGATACTTTGTGACTAATTTTCATCTAATCTTTTTAAATCTACTTATTGAGATAACtttcatgatttattttccccccaaaaatTAGACAGCAGAGGCATTTTTTTGAATTATGTGGGTGGACTCAGATGTGTACAATCACGTAATGATTACTTATTCATAGGACATTTTACAGTCTCTAGAAGACCAATGAGCTTTCCTaccaatgttgtttttttttttggtttcaccGGTTTGACTGAGAGCTacgaaaaaagatttttaaaaaaaaaaaaacgagagagacactgaatcccaaatggcttggCAGACTTTTATAGGGAGTAGGGGTCCATTTCAGATGCAGCCAGCCGGAGACACGAGACAGGTCGTGAGGTCCTGTCCATTAGGAGAAGGTCTCTGTTCCTTTGACACAGTGCTGAAAACCAAAGGCTCATGCACCTGAACTCATCAGAACATGACTCACACTAAAGCAGGAGTGGGCGATAATACTACTTCTCTTTTCCAGCCATATCAAGGTCATTCTTGGAAGAGGCCATCATGAGTTCTGGActaaaaaacatgattttttttttttttaagaaacagaAACCATATTTGCACAGAAAATTGTGGGTCAATCCTAATCACAATCCCAGTTGGGTAGTGAGCCAAGTGTACAAGTCTTCTGATGTGCATAAAGAAGACTGCTTTGTGATTTCAAGAAAAACTAACATGCAGAGAATGGCTTAGGTGTTAGTTTTTTTGGTTGTACTTTGAATTTAAATCACAGGGTTATTAAATAGGGACCCCTGAACTGCTCATCTCTATGACAGGATTAGATTAGCCCTCcttttggataaaaaaaaaaaatctgccaga

Function

symbol description
nr2e1 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; presumptive diencephalon; and presumptive neural retina. Orthologous to human NR2E1 (nuclear receptor subfamily 2 group E member 1).

NR:

description
PREDICTED: nuclear receptor subfamily 2 group E member 1 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08545 NR2E1, TLX, tll; nuclear receptor subfamily 2 group E member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918403.2 True 2884 mRNA 0.47 9 10167281 10175121

Neighbor

gene id symbol gene type direction distance location
nbas nbas,LOC108439588,LOC108442060 coding upstream 320321 9659527 ~ 9846960 (+)
smek1 ppp4r3a,smek1,LOC107726626,LOC107555622,LOC107698404,LOC107601285,LOC107696138 coding upstream 673679 9475295 ~ 9493602 (+)
erh ERH,erh,LOC100699790,LOC101174968 coding upstream 692214 9470674 ~ 9475067 (+)
LOC113528867 LOC108439581,LOC108256302 coding upstream 724807 9387830 ~ 9442474 (+)
slc22a16 slc22a16,LOC107602826,LOC107726421,LOC107696098,LOC107693213 coding upstream 1475577 8678600 ~ 8691704 (+)
foxo3b foxo3,LOC108436468 coding downstream 58795 10233916 ~ 10263830 (+)
cep57l1 cep57l1 coding downstream 169201 10344322 ~ 10351287 (+)
grm1a grm1,grm1a,LOC108279026,LOC108436473,LOC107679500,LOC107726479,LOC107696122 coding downstream 200277 10375398 ~ 10396031 (+)
rab32a rab32,rab32a,LOC107679502,LOC107601480,LOC107696121 coding downstream 222485 10397606 ~ 10420822 (+)
adgb LOC108279018 coding downstream 251684 10426805 ~ 10466068 (+)
G410916 NA non-coding upstream 55139 10110230 ~ 10112142 (+)
G410885 NA non-coding upstream 59775 10104839 ~ 10107506 (+)
G410649 NA non-coding upstream 519595 9646688 ~ 9647686 (+)
G410627 NA non-coding upstream 599571 9567438 ~ 9567710 (+)
G410596 NA non-coding upstream 703035 9463963 ~ 9464246 (+)
G410953 NA non-coding downstream 18264 10193385 ~ 10197489 (+)
G410937 NA non-coding downstream 116936 10292057 ~ 10360477 (+)
G411024 snw1,LOC107681047,LOC107662182 non-coding downstream 378908 10554029 ~ 10557017 (+)
G411029 NA non-coding downstream 388462 10563583 ~ 10567578 (+)
G411282 NA non-coding downstream 533053 10708174 ~ 10709657 (+)
LOC113529148 NA other upstream 1063057 9098377 ~ 9104224 (+)
G409600 NA other upstream 2288736 7877795 ~ 7878545 (+)
LOC117596594 NA other upstream 3096248 6764911 ~ 7071033 (+)
LOC117596573 LOC108280157 other upstream 3427754 6613273 ~ 6739527 (+)
G410936 snx3 other downstream 2928 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 22595 10197716 ~ 10230807 (+)
armc2 armc2 other downstream 60860 10235981 ~ 10295205 (+)
G411297 NA other downstream 589093 10764214 ~ 10764729 (+)
aig1 aig1,LOC107675100,LOC107689442,LOC106607822 other downstream 940452 11115573 ~ 11153005 (+)

Expression


Co-expression Network