erh (ERH,erh,LOC100699790,LOC101174968)


Basic Information

Item Value
gene id erh
gene name ERH,erh,LOC100699790,LOC101174968
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 9470674 ~ 9475067 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917555.2
CCTTTATTTTGAAAACGGGGCAAGCCATTGTCGCCGGAAGTAGACTTTTGTGTTGTTCATGCCGTTGCAGCTGTTGTAGAAAAGAGCTGCAAGCGCTAACGACAGTCTCAGTTGTCTTCGTTACTTTTACGTCTAAACATGtcTCACACAATTCTGCTGGTTCAGCCGACCAAAAGACCAGAGGGAAGAACATATGCAGATTATGAGTCTGTCAATGAGTGCATGGAGGGAGTGTGTAAGATGTACGAGGAACATCTGAAAAGAATGAACCCCAACAGCCCGTCCATCACGTACGACATCAGCCAGCTGTTTGATTTCATTGATGACCTGGCTGACCTCAGCTGTTTAGTGTACCGGGCTGACACACAGACCTACCAGCCTTACAACAAAGACTGGATCAAAGAGAAGATCTATGTTCTGCTGAGACGCCAGGCCCAACAGGCGGGGAAATAGAATGAAGGAAACATTCTTGTGGGCTGCACTGATTTTTATTCCCCAAACCCTCCACAGATTTGTTCATTTGATCAGAGCTACACTGCATCACTGGGCAAGCTAGCTGGAGCTGGCGACATGCTTGTAACCATTAAACCGTTCATATATAATGTGtacatttcccttttttcctccatgtttgtttcaGATTTAACCCACAATGTTATGAAAGTGGTTTAAATGAAAGCTTATTGTGTTCGCAAGGGTTCGGTTTTGTTgtgtgggtttgttttgttgtaatcTTATGACTTTATCCAGTTTTATAAAAATGGTGGTAACTATGTTAGGTGATGTTTCTTTTGATCagctttgtattttattttattttgttttggtcATTTAGTACAATAAACAACTTGATGGAAATTAA

Function

symbol description
erh Predicted to be located in nucleus. Orthologous to human ERH (ERH mRNA splicing and mitosis factor).

NR:

description
PREDICTED: enhancer of rudimentary homolog

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0007049 cell cycle biological_process
GO:0006213 pyrimidine nucleoside metabolic process biological_process
GO:0030496 midbody cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917555.2 True 862 mRNA 0.42 4 9470674 9475067

Neighbor

gene id symbol gene type direction distance location
LOC113528867 LOC108439581,LOC108256302 coding upstream 28200 9387830 ~ 9442474 (+)
slc22a16 slc22a16,LOC107602826,LOC107726421,LOC107696098,LOC107693213 coding upstream 778970 8678600 ~ 8691704 (+)
cdc40 cdc40 coding upstream 842910 8606208 ~ 8627764 (+)
LOC113529322 gpr6,LOC107739193,LOC107564602,LOC107667838,LOC101067178 coding upstream 954117 8514764 ~ 8516557 (+)
fig4a fig4 coding upstream 961977 8451370 ~ 8508697 (+)
smek1 ppp4r3a,smek1,LOC107726626,LOC107555622,LOC107698404,LOC107601285,LOC107696138 coding downstream 228 9475295 ~ 9493602 (+)
nbas nbas,LOC108439588,LOC108442060 coding downstream 184460 9659527 ~ 9846960 (+)
nr2e1 nr2e1,LOC107726424,LOC107726614,LOC107602776,LOC107601200 coding downstream 692214 10167281 ~ 10175121 (+)
foxo3b foxo3,LOC108436468 coding downstream 758849 10233916 ~ 10263830 (+)
cep57l1 cep57l1 coding downstream 869255 10344322 ~ 10351287 (+)
G410596 NA non-coding upstream 6428 9463963 ~ 9464246 (+)
G410549 NA non-coding upstream 27318 9442994 ~ 9443356 (+)
G410539 NA non-coding upstream 94834 9375106 ~ 9375840 (+)
LOC113528860 NA non-coding upstream 186203 9277036 ~ 9284471 (+)
G410465 NA non-coding upstream 226881 9211551 ~ 9243793 (+)
G410627 NA non-coding downstream 92371 9567438 ~ 9567710 (+)
G410649 NA non-coding downstream 171621 9646688 ~ 9647686 (+)
G410885 NA non-coding downstream 629772 10104839 ~ 10107506 (+)
G410916 NA non-coding downstream 635163 10110230 ~ 10112142 (+)
G410929 NA non-coding downstream 690511 10165578 ~ 10248321 (+)
LOC113529148 NA other upstream 366450 9098377 ~ 9104224 (+)
G409600 NA other upstream 1592129 7877795 ~ 7878545 (+)
LOC117596594 NA other upstream 2399641 6764911 ~ 7071033 (+)
LOC117596573 LOC108280157 other upstream 2731147 6613273 ~ 6739527 (+)
G410936 snx3 other downstream 702982 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 722649 10197716 ~ 10230807 (+)
armc2 armc2 other downstream 760914 10235981 ~ 10295205 (+)
G411297 NA other downstream 1289147 10764214 ~ 10764729 (+)
aig1 aig1,LOC107675100,LOC107689442,LOC106607822 other downstream 1640506 11115573 ~ 11153005 (+)

Expression


Co-expression Network