cdc40 (cdc40)


Basic Information

Item Value
gene id cdc40
gene name cdc40
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 8606208 ~ 8627764 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918575.2
GACCCTTAGACAACAACATCGAAGATGGCGGCTCTGGTCGGTTCCCTCGTTGCGTACGGCAgtgattcagattcagaaaaTGAGCCCGAGTCCAATACAAATACAGAACAAGCTGATCCAGATGCAGTGGCACATCTCCAGCCTTTGAAATCTGGAAAAACTACAAGTTTGGTTCTTAATTCGGCGCCTGAGGTCGCTGTAAAGGAAGATGTTGAGACAGGAACGCATCTGGATCCCTCCCTCAAGGAGATCAGCTACAATCCTACCTACGACACCATGTTTGCACCTGAGtttggacCTGTTAATCCGTTTAAAACTCAACAAATGGCCGCACCGAGGAACATGCTCTCGGGATACGCTGAGCCTGCCCATGTCAACGACTTCATGTTTGAACAGCAACGGAGGACGTTTTCTACTTTCGGCTATGCCTTGGACCCCTCCATGGACAACAATCAGGTTTCTTCAGCCACTTATATAGGAGCAGTGGATGAGGCAGAGAAACACAAAGgGCAAACAGTGTTCGAGACGGGCCCAAGAAAAatggagaagaggaagaaagtgaaAGGAGGAGATGCATCGGAGATCGATGGCTTCCTGGGACCTTGGGCTAAATATCAGGATGAAAAAGATGTTGCTAAACCCACAGAGgaggagcagaaggagtTAGATGAAATCACAGCAAAGAGGCAGAAGAAAGGCAAAAATGAGGAAGAGGCTCCTGCAGAGGAGAAGACCATTCTACACGTCAAAGATGCGTACGATTACCAGGGCCGTTCTTACCTGCACGTTCCACAGGATGTGGGTATCAACCTGCGCTCAGCCAACATACCTGAGAAATGCTATCTGCCCAAAAAGCAACTGCACGTCTGGACCGGACACACAAAGGGTGTCAGTGCTATTCGGCTGTTTCCTGTGTCTGGCCACCTGCTGCTCTCCTGCTCTATGGACTGTAAGATTAAGTTATGGGAGGTGTACAATGACCGGAGATGTTTACGGACATTTATTGGTCACAGTAAAGCGGTGCGTGATATCTGTTTCAACAACACCGGTACTCAGTTTCTCAGTGCTGCATATGATCGCTATCTCAAACTGTGGGACACGGAGACcgGTCAATGCATCTCAAGGTTCACTAACAGAAAAGTGCCCTACTGCGTGAAGTTCAACCCAGATGAAGACAAGCAAAACCTGTTCGTAGCCGGCATGTCGGACAAGAAGATTGTgcagTGGGACATTCGCTCAGGGGAGGTGGTTCAGGAATATGATCGTCACCTGGGAGCCGTCAACACGATCACGTTTGTGGACGAGAATCGCCGCTTCGTCAGTACGTCCGATGATAAGAGTCTGCGTGTGTGGGAATGGGATATTCCTGTGGATTTCAAATATATTGCAGAGCCCAGTATGCATTCAATGCCTGCAGTGACACTGTCCCCCAACGGGAAGTGGCTGGCTTGTCAGTCCATGGATAATCAGATCCTAATCTTTGGAGCTCAGAACCGATTCAGGCTGAACAAGAAGAAGGTCTTCAAGGGTCACATGGTGGCTGGATATGCTTGTCAGGTGGACTTCTCTCCAGATATGAGtTATGTGGTGTCTGGTGATGCGGATGGGAAGCTGAATGTCTGGGACTGGAAGACCACCAAACTGTACCACCGAATTAAAGCACATGACAAAGTGTGTATCAGCGCCATCTGGCATCCACACGAGACCTCCAAGGTCATCACCTGCGGCTGGGATGGACAGATCAAACTCTGGGACTAAGATGAAGAAGACAATGGGCGAGATGATGGAAGAAGTAGTCGGAAAACTAAATCTAAATTTTTTGCCATCTTGTCAGTTTTTTGCTCAGCTGATGTGATCTTCATTGCGTCTGTCTCGTGCTAAGGTTTATGGTAATTCCGCATTATGGTATTGGCTTTGCTCTGAGTTTTGTATAAATTTTATGGACTGGTATCCAGCCCTGATTTCtagtttgtttggtttttatcTTTCCCTCCCATTTCAGAGACTCTGGGCACTTGCAATGGCTggggagatttttattttgttgttattcATTTTAGTGTTACTGCCATGTACTGCTAAAGCCATGATTGGTAACACTTATACATAATGTCAGCTTTTCAATTCAGTCACCCAGTGTCTCTTTCtgaacataataaaacattttgtacttttttccatCA

Function

symbol description
cdc40 Predicted to act upstream of or within cell division and mRNA splicing, via spliceosome. Predicted to be part of catalytic step 2 spliceosome. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human CDC40 (cell division cycle 40).

NR:

description
pre-mRNA-processing factor 17

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process

KEGG:

id description
K12816 CDC40, PRP17; pre-mRNA-processing factor 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918575.2 True 2183 mRNA 0.47 15 8606208 8627764

Neighbor

gene id symbol gene type direction distance location
LOC113529322 gpr6,LOC107739193,LOC107564602,LOC107667838,LOC101067178 coding upstream 89651 8514764 ~ 8516557 (+)
fig4a fig4 coding upstream 97511 8451370 ~ 8508697 (+)
irf4l LOC108274592 coding upstream 214946 8388136 ~ 8391262 (+)
LOC113528738 slc22a23,LOC107739176,LOC100334012,LOC107661357,LOC107557020,LOC107671089,LOC107572585 coding upstream 226944 8360567 ~ 8379264 (+)
phactr1 LOC108260295,LOC108443237 coding upstream 292408 8296810 ~ 8313800 (+)
slc22a16 slc22a16,LOC107602826,LOC107726421,LOC107696098,LOC107693213 coding downstream 50836 8678600 ~ 8691704 (+)
LOC113528867 LOC108439581,LOC108256302 coding downstream 760066 9387830 ~ 9442474 (+)
erh ERH,erh,LOC100699790,LOC101174968 coding downstream 842910 9470674 ~ 9475067 (+)
smek1 ppp4r3a,smek1,LOC107726626,LOC107555622,LOC107698404,LOC107601285,LOC107696138 coding downstream 847531 9475295 ~ 9493602 (+)
nbas nbas,LOC108439588,LOC108442060 coding downstream 1031763 9659527 ~ 9846960 (+)
G409997 NA non-coding upstream 77160 8527621 ~ 8529048 (+)
G409899 NA non-coding upstream 194149 8409707 ~ 8412059 (+)
G409896 NA non-coding upstream 211266 8391501 ~ 8394942 (+)
G409693 NA non-coding upstream 480789 8104207 ~ 8125419 (+)
LOC113528831 NA non-coding upstream 671702 7926194 ~ 7934506 (+)
G410061 ust non-coding downstream 74186 8701950 ~ 8702384 (+)
G410065 NA non-coding downstream 90158 8717922 ~ 8718940 (+)
G410070 NA non-coding downstream 94177 8721941 ~ 8722158 (+)
G410072 NA non-coding downstream 95071 8722835 ~ 8723194 (+)
G410074 NA non-coding downstream 96377 8724141 ~ 8724345 (+)
G409600 NA other upstream 727663 7877795 ~ 7878545 (+)
LOC117596594 NA other upstream 1535175 6764911 ~ 7071033 (+)
LOC117596573 LOC108280157 other upstream 1866681 6613273 ~ 6739527 (+)
LOC117596581 NA other upstream 1952190 6633365 ~ 6654018 (+)
G408929 NA other upstream 1963710 6556363 ~ 6642498 (+)
LOC113529148 NA other downstream 470613 9098377 ~ 9104224 (+)
G410936 snx3 other downstream 1550285 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 1569952 10197716 ~ 10230807 (+)
armc2 armc2 other downstream 1608217 10235981 ~ 10295205 (+)
G411297 NA other downstream 2136450 10764214 ~ 10764729 (+)

Expression


Co-expression Network