LOC113528831


Basic Information

Item Value
gene id LOC113528831
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 7926194 ~ 7934506 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402999.2
AATGTAACTAGTGGTGCTGAGATAGGGGGCTTGGTCAGCAGCCACCACAGCTAGTTAGCGAGCTACAAAGTGACTAGCATGATGGCGTGGATCGAGGTCGATAACATTAGCTTGGTAGCTGAACtttgtacagatgaggaggtgagagagctggacagattaaAGGCCAAATGTGCAGCTGTtttgctctctttaggtagagaggaagcaagggctaaatcccactggtgGTGCAGGTCTGGTGGTGACAGCATGTCCTGTCATAGAGTCTGAGGTGGACAACATGCAGCATGTATATGACAACATGCTGAGTTCATACTCGCCTCTGTGCCAGTACACTAAGGCCCACATTAGTTTCCGTGCTTATCTGGATCCAGGTGTCCTGGAGACATACTTTAGGATACCGAAGCTAAATTGAAAGAGGCAGCCTCAACCAGCAAGACTAAATGGAAAGCTGTCAGTAAAatccaccattaagagagtcctacatcACCAAGGCTGTCATTGCTAGGAAGAAGCCCTCTTTTTTATATGCCAACTCTAAAACCAGCataaaaagccagactgaagtttgcaggtgataaCCAGCCTTTTGAAGAAGTGTTCTCTGGCcagatgaaacaaaatcaaactgtgttatgtatggaggaaaaaggttgaggcttttaatccaaagaacaccatcccagctgtaaagcatgggggtggcagcatcatgtggggtgttttgctggaaaaggacTTCAGAAAATAGACGGCGGGAGGGAGGAGGACGCTGAAGCtacacctcaagacatcagccagaaagttaaaacttggtcacAACTGATTCTTCCAGCAAGGGCTTCAAACAGACATGGACATAGCTCAGGAAACCAGAGGTACTCTTGGAATTTCCACCTGTACTCTGCTCCAGCAATTCTCTACAATTTGGACACGAAGCCCAGGTTCTGAAGATGAAAAGTGTCTCCAGagaatgatgctgccaccaccatatttcactgtagggatggtgtttATTGAGTCAGAGTTACAGTGGATCCCAGGAACACCGGTTGCAAGGAGGAAGAATTCACCCTGGAGAAttcaccagtccatcgcagagcaCAATGAGCATAACCATCAGCATTCATACaattagcatagccagtccacctacctgcatgtttttttggacagtgggaggaaaccggagaggtaacccagaggaaacccacaggaccacggggagaacatgcaaaacacagTACAGACAGTCAGATTACAGCgatacccactgcaccaccatagCTCCCCATGTCTCCTTTCAAACTTAGGGGTTTCACATATAGTAAAACCATAATTCTGAAACTTTGGAACATTTACTTTTATGGTAATAAATTGCAGTCTGTCAATCTGTTTTGTATATGATTTGATaaacatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402999.2 True 1424 lncRNA 0.45 5 7926194 7934506

Neighbor

gene id symbol gene type direction distance location
mei4 mei4 coding upstream 55908 7818751 ~ 7870286 (+)
myo6a myo6 coding upstream 199551 7611855 ~ 7726643 (+)
senp6a senp6 coding upstream 318854 7579265 ~ 7607340 (+)
LOC113528764 LOC108427476,LOC103026240,LOC108274573 coding upstream 379384 7530227 ~ 7546810 (+)
nrl LOC108275247,LOC108427498 coding upstream 400301 7520448 ~ 7525893 (+)
nt5e nt5e coding downstream 752 7935258 ~ 7953986 (+)
pnrc1 LOC108256521 coding downstream 218949 8153455 ~ 8157226 (+)
LOC113528790 pm20d2,LOC108280227 coding downstream 227768 8162274 ~ 8171138 (+)
LOC113529170 NA coding downstream 238009 8172515 ~ 8186738 (+)
arhgap39 arhgap39,LOC107672944,LOC107559071 coding downstream 259182 8193688 ~ 8234028 (+)
G409603 NA non-coding upstream 43806 7882167 ~ 7882388 (+)
G409602 NA non-coding upstream 47093 7878890 ~ 7879101 (+)
G409390 NA non-coding upstream 394898 7530925 ~ 7531296 (+)
G409280 NA non-coding upstream 586177 7337337 ~ 7340017 (+)
LOC117596585 NA non-coding upstream 657778 7262801 ~ 7268416 (+)
G409693 NA non-coding downstream 169701 8104207 ~ 8125419 (+)
G409896 NA non-coding downstream 456995 8391501 ~ 8394942 (+)
G409899 NA non-coding downstream 475201 8409707 ~ 8412059 (+)
G409997 NA non-coding downstream 593115 8527621 ~ 8529048 (+)
G410061 ust non-coding downstream 767444 8701950 ~ 8702384 (+)
G409600 NA other upstream 47649 7877795 ~ 7878545 (+)
LOC117596594 NA other upstream 855161 6764911 ~ 7071033 (+)
LOC117596573 LOC108280157 other upstream 1186667 6613273 ~ 6739527 (+)
LOC117596581 NA other upstream 1272176 6633365 ~ 6654018 (+)
G408929 NA other upstream 1283696 6556363 ~ 6642498 (+)
LOC113529148 NA other downstream 1163871 9098377 ~ 9104224 (+)
G410936 snx3 other downstream 2243543 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 2263210 10197716 ~ 10230807 (+)
armc2 armc2 other downstream 2301475 10235981 ~ 10295205 (+)
G411297 NA other downstream 2829708 10764214 ~ 10764729 (+)

Expression


Co-expression Network