nt5e (nt5e)


Basic Information

Item Value
gene id nt5e
gene name nt5e
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 7935258 ~ 7953986 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918380.2
GATGCTGCTGCGTGGTGTTAGGCATTGCACTGCGCTCACGCGCTGCCGAAATCCTGCGACGCCACGGAATGCGCGACTTGACGGCGGAGCGCGCGCTGCTCCCGCTGCTGATGCTGTGCGCGAGCTGGAGGCTCGTGGCGGCAAACTGGGAGCTCACGCTTCTGCACACCAACGATGTGCACGCCCGCGTCGAGGAAACCAACAAGGACTCGGGCAAGTGCACGAAGGGCGGCTGCTTCGCCGGCGTCGCGCGACGGTTCACGAAAATCAAAGAGATCCGGCGCAGCGACAAGAACGTGCTCCTGCTGGACGCCGGGGATCAGTTCCAGGGCACCGTGTGGTTCAACTACTATAAAGGCAGCGAGGCGGCGTACTTCATGAACAAACTCGGCTACGATGCCATGGCTCTAGGAAACCACGAGTTTGACAATGGAGTGGAGGGTCTCAAGCCCTTCCTGAAGGAGGTGAACTGCACTGTGCTCAGCGCTAACATCAAGGCTGTTGAACCTGTTGCATCACAGCTTAGTGGATCTTATTTACCGTATAAAATCTTCAACATTGGCTCTGAGAAAGTCGGCATAGTGGGATACACATCCAGGGAGACACCCGATCTGTCAATGCCAGGGCCGTACCTGCGTTTCGAGGACGAGGTCACTGTCTTGCAGCATGAGGTAGACAAACTCATCACTCTGGGCGTTAACAAGATCATCGCTCTCGGCCATTCTGGATTTGAAACGGACAAAGAGATCGCCAAAAAGGTCCGTGGCGTGGACGTGGTGATTGGAGGACACACCAACACTTTTTTATTCACAGgggCTCCCCCGTCTAGCGAGGTTCCAGCAGGACCCTACCCATTAATGGTGCAGTCCGATGATGGTCGTCAGGTGCCCGTGGTCCAGGCCTATGCTTTCGGGAAATACCTCGGCTATCTCAAAGTGACTTTTGATTCTAATGGAAACTTGTTAAAAGCCGAAGGAAATCCAATCCTCCTGGATAGCAACATAACTGAAGATCCCAGCATTAAGGCAGACGTGGAGTCCTGGAAGGTCAACTTGGCCAATTACTCATCTCAGTTCGTGGGGAAGACTCTGGTCTATCTTAATGGGACATTTGAAGAGTGTCGATTTCGTGAATGCAACCTGGGAAACTTGATCTGTGATGCCATGGTCCATCACAACATCAAATATCCAGATGACTTTCAGTGGAACCATGTTAGTGCCTGTATTTTAAATGGAGGAGGTATACGGAGCCCCATTGATGAGAGAAGCAGAAATgGTAGCATCACTATGGAGGATGTGATCGCTGTGTTGCCGTTTGGTGGAACGTATGATCTGGTTCAACTGAAAGGCTCTACACTGCTCCGGGCCTTCGAGCACAGTGTACACAGATATGGAGGAAATACTGGGGAGTTCCTACAGGTCTCAGgCTTTCAGTTAGAGTATGACCTGAGTATGCCCCCTGGTGAGCGAGTGAAGAAGGCGAGTGTGTTGTGTACTGAGTGTCGAGTGCCGCGGTACGAGCCTGTGGTCCCTGAAAAAGTCTACAAGGTCATCATGCCATCCTATCTAGTGGATGGAGGAGATGGTTTCTCAATGATCAAGGAGGAGAAGCTGAAACATGACAGTGGTGACCTTGACATAACCGTCTTTGCTGGCTACATCTCAGACAGGCAGAGGGTCCATCCATCTGTGGAGGGACGAATCCGTCTCGTTAATTCTGCTGTTGGAATCTCAAGTCAGCTGACTGCTTTACTGCTCTTTGTGCTGCTCTGGGTCTCACGTTTAAGCTTGTGAGCTTAGTACAGTACGTCCTCTGTATCTCAGTTGTATACATCAGAGTCTttgttatttttactgtttaatgaCTGAGGAGATTGTGATATTTTATAGAGATTTGCTATAGGTAATGTACTGTCTTGTATAATAAGAAAAACCTCTATGTCTATGTTCTCTGTCTATTAATGTGTTTGAGTAATGTTTGTAAATGACACAAGATTGTACTGGGAAATTATGTATAGACATGCCATTCTGCCAAGATacagtcagtgatttttatCTCAATATTGATTGCTAAAACCTAATaatcaaactgaaaaaaaatcaggaaggTTTAAAATTAAtcttaacattattattttttaacaatgtcAGCAATAAGATTGGTCTGTTACAATGTATTAgtatttatttgacatttagtAAATTACTACTAAATAGTACATATTGATTTTTACAGTTTTCACTATAGTATCGATGATTTAAATCACAAGATGAACTACACAATAAAAAAGGTTAGCTTCCACAATGCCATTCTAAAGAAGTAAcaactaaaaatatattttagaaacAATCTGCTGCCATGTATTCACTTCTTCAGCAgttgaatgtaatgtaatgttgtcgtatttacatgaatttgtCTTTATGTTAGATGACTGTATTcagtttatgtttaaaaaaaaaaaaaaaaaaacaggttcaCTTGTTCCTCAACTAGATCTAAGAATATTGTGAGTCGAGGCCATGTAGGAAGCTGGCTGAAGAAGGAAGTCGTTGTAattcagtaaaaacacagtTCTCAGGGAGCCATTTGGGAACAAAAGGTGCTTTGTGGCCATCTTTTGCTGTTTGCACTGAACTGACCTTGAGCTTGCTTGCTTTATTTGTTTCAGTATCTCACCGTAGGTGCAGTTGGGGACCTCAAAAAGGGGAGTTTCACTTAACAGCGCCAACTATTTCGGCATTCAGTCTAAAGGCTTTACTTTGTTTCTTGTGCTAcccattttcctgtaactgcaagCCTATTATTAAGACACTGCCTCATTCAGATGTAGAAAATATCAGCACTGTCTATAATACAGAACTGTATAATTTCCATTGCAAATGAAATGGTAATTGAAAGAAAAAGTCCCCAATTTCATGGGGCACTGCAGCAGCTGCATGCACTTTTCAGAGTGGAATTTTACTATGAATTCTTTGAACTGATCTAAATTTTGTGTGCTAAAGGGCAGAGGGGACGCATTTAAATGCTTCATATATAACTGGTAATAGAGCTGAAACTAAAGtcacataaatgtgtgtgaaaactgTTACAGCTCTGAATTCTCACCTTGGTCAGAAGGTTtcgttaattttctataatagcatttttttaaataataatttatagtaCATTATTGCAGGGGATCCCAAACTAGAGGTCACGACCCCATGTGGTGTCATATGATTTACAAATTTAGGTCACAGGAGAAACTCACACTCTCCTCTTTTGTTTAATTCATtgcacaaattaatattagacatattgaagatggattttgtgtgctaatatttttaaatgttttgaaatcacagaaaattcatgtccatttggggtcatttgcccaaaaaaagtttgggaatccaaatcttttattgttttattctaaCAGCTTATTCAATGAAAGAGGCATCAAAGAAAGCCCAAaccatgatgctcccaccaccatgtttcataCATGGGATGAGAGCTTGGTGTTGGTGTTTAGTACTTGTCCCTCTTTTGTTCATAAACAGTGGTCCCAAAAATGTACAGTTGGACTTTTTGAGACGAGATGAGACATgcagcaatatttattttttcatatttctttcattaaaacctgtttatgttgtttttttttaatagtgtacACTTGGAGTGGAGATTAAAGCAACTTCTAGAGATCTCTATAAGACTTTTGACGTTACCTTTGGGTTCTTTGTCCTTCAGCTCTGCACACTGTTTTCTTAGTGTGGTCTTTGCAGGACACCTACTTCTTGGGAGAGCGCCAACACATCCAAATTTCTCGTTTGTAAGCCTTTTCTCTTATTGTGCCTGGATGAACACTCAGTAATCATCTTTAAAGTCAACAGGCTAGTGTTGTCATAGCTAGTAGGAACAAGCTAGTAACTTAATGTACAGTGGCCCCAAAAGGTATTTGGACACGTAAGCCACACTTAAAATGTATGAATCtcactgcattagaaaacaTGTCAATCCAGTGAAATCTACCACAAGCacacttttcaagcaaaacatttccaaaaaaatagattatgtttagaaatataaaaataatacatatactTGTCATAATTAGACAACAAACTATTTTGACATTCAATATTGGCTTCATTAAAGATCACAGTTactgtgttttagtgtttagttCACCATAGTTTGTTTCACAGAATGTCTTGCCAACGTCTGGGCCTGGAAACAACCAGTTTCTGTAACAGCTTTGATGGATGTTTCCTCTAAATAGTACCCTTGGTGCAGTTTGGTTGGAATTTTTCTCCTGGctttgtttacacaaacactcTACCATCAGATCCATCCAAGTTCAGTTTGAACTCATCTGAAAATAAGATACTTCTCTTATTGCTGCTGTCTTTCTGCGCATGTTCTTTTGCAAATTGCACCCTTGCCTTCTTATTTCTGAGGCTGACGAAAGGTTTCCGCCACATTACTCTCCCTCTGTATCCATGCTCATTGAGCCTGTTTTGAACAGTTTGTGCAATAAGTTGTATCTGGTAGTTCTCATTGATGTCTGAAACAATCCTTGctgctgtttctctgtgtttttcttaattttacTATCAGTTATGCCTGTACGTTGTCTGCTTTCATTCGCAAGTCCTTcatctttgaattttttttttacaatacacTGATACATAGAtaaaaattacagtatattatttgggaaatgttttgcttgaaaaTGTTGTGCTTGTAGTATCGTTccttaaaataaatgccacttggTTTGA

Function

symbol description
nt5e Predicted to enable 5'-nucleotidase activity. Acts upstream of or within response to copper ion. Predicted to be located in membrane. Predicted to be anchored component of membrane. Predicted to be active in plasma membrane. Is expressed in brain and intestinal bulb. Human ortholog(s) of this gene implicated in hereditary arterial and articular multiple calcification syndrome. Orthologous to human NT5E (5'-nucleotidase ecto).

NR:

description
PREDICTED: 5'-nucleotidase-like

GO:

id name namespace
GO:0046688 response to copper ion biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016788 hydrolase activity, acting on ester bonds molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K19970 NT5E, CD73; 5'-nucleotidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918380.2 True 4793 mRNA 0.41 9 7935258 7953986

Neighbor

gene id symbol gene type direction distance location
mei4 mei4 coding upstream 64972 7818751 ~ 7870286 (+)
myo6a myo6 coding upstream 208615 7611855 ~ 7726643 (+)
senp6a senp6 coding upstream 327918 7579265 ~ 7607340 (+)
LOC113528764 LOC108427476,LOC103026240,LOC108274573 coding upstream 388448 7530227 ~ 7546810 (+)
nrl LOC108275247,LOC108427498 coding upstream 409365 7520448 ~ 7525893 (+)
pnrc1 LOC108256521 coding downstream 199469 8153455 ~ 8157226 (+)
LOC113528790 pm20d2,LOC108280227 coding downstream 208288 8162274 ~ 8171138 (+)
LOC113529170 NA coding downstream 218529 8172515 ~ 8186738 (+)
arhgap39 arhgap39,LOC107672944,LOC107559071 coding downstream 239702 8193688 ~ 8234028 (+)
LOC113529048 tsta3,LOC107672947 coding downstream 281207 8235193 ~ 8254359 (+)
LOC113528831 NA non-coding upstream 752 7926194 ~ 7934506 (+)
G409603 NA non-coding upstream 52870 7882167 ~ 7882388 (+)
G409602 NA non-coding upstream 56157 7878890 ~ 7879101 (+)
G409390 NA non-coding upstream 403962 7530925 ~ 7531296 (+)
G409280 NA non-coding upstream 595241 7337337 ~ 7340017 (+)
G409693 NA non-coding downstream 150221 8104207 ~ 8125419 (+)
G409896 NA non-coding downstream 437515 8391501 ~ 8394942 (+)
G409899 NA non-coding downstream 455721 8409707 ~ 8412059 (+)
G409997 NA non-coding downstream 573635 8527621 ~ 8529048 (+)
G410061 ust non-coding downstream 747964 8701950 ~ 8702384 (+)
G409600 NA other upstream 56713 7877795 ~ 7878545 (+)
LOC117596594 NA other upstream 864225 6764911 ~ 7071033 (+)
LOC117596573 LOC108280157 other upstream 1195731 6613273 ~ 6739527 (+)
LOC117596581 NA other upstream 1281240 6633365 ~ 6654018 (+)
G408929 NA other upstream 1292760 6556363 ~ 6642498 (+)
LOC113529148 NA other downstream 1144391 9098377 ~ 9104224 (+)
G410936 snx3 other downstream 2224063 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 2243730 10197716 ~ 10230807 (+)
armc2 armc2 other downstream 2281995 10235981 ~ 10295205 (+)
G411297 NA other downstream 2810228 10764214 ~ 10764729 (+)

Expression


Co-expression Network