G409997


Basic Information

Item Value
gene id G409997
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 8527621 ~ 8529048 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU486700
TGGAACATTTAACATAACATTAGCTTTTATTAATTCAAGCGAACTGTTACATTAAACAGTTACATAAGTTACAAGGTGTACACCTtaaaattatattcattttttttgtttgtttgtttgtttcttcttcttttattttcctgtCTGGAACATAGAAACAGCTAATGTTTAGAAATGCAGGCAAAAAGTAGTAACGGCACAATACATTCATCAACTTAACAACACGTCTATACAAACCATAAGGCAGGAGAAGGAGAAATGTATGGCCAGGTCTTTTCTGTCAAAAGACAGTCAGTTGATACTGTAGTGGTCTGACTCCTTATTGATTTAAACACACCATGTAGAGCCCTCTGAATGCTAGAACCTGATAAAACATAACATCTTGCCTTAATCTCTCGGCACCATTTAAACCccttatattgttttttttgtttggtttttttttttacgaattttcacatctttacagaaaacgAGCATCGTAaccacattttttctttcttattaaaaTCATACAATGACAGTACATATTGCTCAGAGATATGTAAAATTATTGTAAtgagatcattttttttaatggaccaTGCCCTCATTTCACATAGGCATTTACTGGCctatttaaaatgtgaaatgtctTCCTTATACacgtaaaataaaatgaagttaaaaaaataataaaccagatGGTGGCAGCATTGCCTTAGAATTTAATAAGATGCTAAAGACGCATCGCCCCTTTACATAACACTAAACAGCGGATCTTTGTGGTCCCTCCTTGAAATGAGCTACAACATCTGAGTTACTTCTATTAATTGTAAAATAGAAGTGTTAAAAAACCTTGAGAACATCAACATAAGTTGAATTATGTTGTATAAAAAACATGAGAGCAAACATCCTGAAAAAGACAACTGGAGACACAAAGTTTCCTGAAACATACCACATGGAGAACCGTGGAagcaggacagagagaaaacggacacaattttttttcttaaaatggtAATTTCTTAATCATTCCCTCCTAAATATTCAGCTTGTCTCtcccttcttcttttctctcactcCATCCAGTCAACCTCATCAAACTCAGAGTCATCTTCTGAGTCGCTGTACTCCACAGCAATGCGTCGGGACAAGATAGTGGCTACGTCATTGCCCACACGCTCATGCTTAGCCTCCTGTTCCCTTTGCTCCTCAACCTTCCTCAGCTGGAT
>TU486701
tgtttgtttgtttgtttcttcttcttttattttcctgtCTGGAACATAGAAACAGCTAATGTTTAGAAATGCAGGCAAAAAGTAGTAACGGCACAATACATTCATCAACTTAACAACACGTCTATACAAACCATAAGGCAGGAGAAGGAGAAATGTATGGCCAGGTCTTTTCTGTCAAAAGACAGTCAGTTGATACTGTAGTGGTCTGACTCCTTATTGATTTAAACACACCATGTAGAGCCCTCTGAATGCTAGAACCTGATAAAACATAACATCTTGCCTTAATCTCTCGGCACCATTTAAACCccttatattgttttttttgtttggtttttttttttacgaattttcacatctttacagaaaacgAGCATCGTAaccacattttttctttcttattaaaaTCATACAATGACAGTACATATTGCTCAGAGATATGTAAAATTATTGTAAtgagatcattttttttaatggaccaTGCCCTCATTTCACATAGGCATTTACTGGCctatttaaaatgtgaaatgtctTCCTTATACacgtaaaataaaatgaagttaaaaaaataataaaccagatGGTGGCAGCATTGCCTTAGAATTTAATAAGATGCTAAAGACGCATCGCCCCTTTACATAACACTAAACAGCGGATCTTTGTGGTCCCTCCTTGAAATGAGCTACAACATCTGAGTTACTTCTATTAATTGTAAAATAGAAGTGTTAAAAAACCTTGAGAACATCAACATAAGTTGAATTATGTTGTATAAAAAACATGAGAGCAAACATCCTGAAAAAGACAACTGGAGACACAAAGTTTCCTGAAACATACCACATGGAGAACCGTGGAagcaggacagagagaaaacggacacaattttttttcttaaaatggtAATTTCTTAATCATTCCCTCCTAAATATTCAGCTTGTCTCtcccttcttcttttctctcactcCATCCAGTCAACCTCATCAAACTCAGAGTCATCTTCTGAGTCGCTGTACTCCACAGCAATGCGTCGGGACAAGATAGTGGCTACGTCATTGCCCACACGCTCATGCTTAGCCTCCTGTTCCCTTTGCTCCTCAACCTTCCTCAGCTGGAT
>TU486702
tgtttgtttgtttgtttcttcttcttttattttcctgtCTGGAACATAGAAACAGCTAATGTTTAGAAATGCAGGCAAAAAGTAGTAACGGCACAATACATTCATCAACTTAACAACACGTCTATACAAACCATAAGGCAGGAGAAGGAGAAATGTATGGCCAGGTCTTTTCTGTCAAAAGACAGTCAGTTGATACTGTAGTGGTCTGACTCCTTATTGATTTAAACACACCATGTAGAGCCCTCTGAATGCTAGAACCTGATAAAACATAACATCTTGCCTTAATCTCTCGGCACCATTTAAACCccttatattgttttttttgtttggtttttttttttacgaattttcacatctttacagaaaacgAGCATCGTAaccacattttttctttcttattaaaaTCATACAATGACAGTACATATTGCTCAGAGATATGTAAAATTATTGTAAtgagatcattttttttaatggaccaTGCCCTCATTTCACATAGGCATTTACTGGCctatttaaaatgtgaaatgtctTCCTTATACacgtaaaataaaatgaagttaaaaaaataataaaccagatGGTGGCAGCATTGCCTTAGAATTTAATAAGATGCTAAAGACGCATCGCCCCTTTACATAACACTAAACAGCGGATCTTTGTGGTCCCTCCTTGAAATGAGCTACAACATCTGAGTTACTTCTATTAATTGTAAAATAGAAGTGTTAAAAAACCTTGAGAACATCAACATAAGTTGAATTATGTTGTATAAAAAACATGAGAGCAAACATCCTGAAAAAGACAACTGGAGACACAAAGTTTCCTGAAACATACCACATGGAGAACCGTGGAagcaggacagagagaaaacggacacaattttttttcttaaaatggtAATTTCTTAATCATTCCCTCCTAAATATTCAGCTTGTCTCtcccttcttcttttctctcactcCATCCAGTCAACCTCATCAAACTCAGAGTCATCTTCTGAGTCGCTGTACTCCACAGCAATGCGTCGGGACAAGATAGTGGCTACGTCATTGCCCACACGCTCATGCTTAGCCTCCTGTTCCCTTTGCTCCTCAACCTTCCTCAGCTGGATacctgagagaaaaacaaatcactCTAGATTTGCTCAAAGGGACTAATCTATTTATTAAGCATTCTTACAAGTTCTACACAATTTATAAATATGCCCATAACAGACTAAATGGTCTCTTGCATATTCCCTAAACAGACTAAACAAGCTACTgagaatatgcaaaaataataaacaatctACTAAATATGCCCAAAAAGACTAAACAGCCTACTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU486700 False 1214 lncRNA 0.36 1 8527621 8528834
TU486701 False 1108 lncRNA 0.37 1 8527727 8528834
TU486702 True 1322 lncRNA 0.36 1 8527727 8529048

Neighbor

gene id symbol gene type direction distance location
LOC113529322 gpr6,LOC107739193,LOC107564602,LOC107667838,LOC101067178 coding upstream 11064 8514764 ~ 8516557 (+)
fig4a fig4 coding upstream 18924 8451370 ~ 8508697 (+)
irf4l LOC108274592 coding upstream 136359 8388136 ~ 8391262 (+)
LOC113528738 slc22a23,LOC107739176,LOC100334012,LOC107661357,LOC107557020,LOC107671089,LOC107572585 coding upstream 148357 8360567 ~ 8379264 (+)
phactr1 LOC108260295,LOC108443237 coding upstream 213821 8296810 ~ 8313800 (+)
cdc40 cdc40 coding downstream 77160 8606208 ~ 8627764 (+)
slc22a16 slc22a16,LOC107602826,LOC107726421,LOC107696098,LOC107693213 coding downstream 149552 8678600 ~ 8691704 (+)
LOC113528867 LOC108439581,LOC108256302 coding downstream 858782 9387830 ~ 9442474 (+)
erh ERH,erh,LOC100699790,LOC101174968 coding downstream 941626 9470674 ~ 9475067 (+)
smek1 ppp4r3a,smek1,LOC107726626,LOC107555622,LOC107698404,LOC107601285,LOC107696138 coding downstream 946247 9475295 ~ 9493602 (+)
G409899 NA non-coding upstream 115562 8409707 ~ 8412059 (+)
G409896 NA non-coding upstream 132679 8391501 ~ 8394942 (+)
G409693 NA non-coding upstream 402202 8104207 ~ 8125419 (+)
LOC113528831 NA non-coding upstream 593115 7926194 ~ 7934506 (+)
G409603 NA non-coding upstream 645233 7882167 ~ 7882388 (+)
G410061 ust non-coding downstream 172902 8701950 ~ 8702384 (+)
G410065 NA non-coding downstream 188874 8717922 ~ 8718940 (+)
G410070 NA non-coding downstream 192893 8721941 ~ 8722158 (+)
G410072 NA non-coding downstream 193787 8722835 ~ 8723194 (+)
G410074 NA non-coding downstream 195093 8724141 ~ 8724345 (+)
G409600 NA other upstream 649076 7877795 ~ 7878545 (+)
LOC117596594 NA other upstream 1456588 6764911 ~ 7071033 (+)
LOC117596573 LOC108280157 other upstream 1788094 6613273 ~ 6739527 (+)
LOC117596581 NA other upstream 1873603 6633365 ~ 6654018 (+)
G408929 NA other upstream 1885123 6556363 ~ 6642498 (+)
LOC113529148 NA other downstream 569329 9098377 ~ 9104224 (+)
G410936 snx3 other downstream 1649001 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 1668668 10197716 ~ 10230807 (+)
armc2 armc2 other downstream 1706933 10235981 ~ 10295205 (+)
G411297 NA other downstream 2235166 10764214 ~ 10764729 (+)

Expression


Co-expression Network