G410072


Basic Information

Item Value
gene id G410072
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 8722835 ~ 8723194 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU486788
TGACATTGTGGTAATTTCTGATGACTTCTGGGACCCTCTCATGGactctttaccctcctgccATCACCGTGCCGCCACCAAGACACTCTGCAACAGCTTATTagatttttctgttcatttttctccatcctgctgctattggaaaaagagaggcagTTGCTTTCAGTGGTTTCTTCAATCTGATACAGTTCTGTTGTCTTAGCTTGTTGGCATAAACTGTCCTGtgtaattattttcctgtatatttgcactttatgtagtcttgtgtaccGTGCTACTTTGCTGGCACACCATCGgctgtcatgggcacaggctcactaatattggacagctgaagactgtccagtttcgatgagcctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU486788 True 360 lncRNA 0.44 1 8722835 8723194

Neighbor

gene id symbol gene type direction distance location
slc22a16 slc22a16,LOC107602826,LOC107726421,LOC107696098,LOC107693213 coding upstream 31131 8678600 ~ 8691704 (+)
cdc40 cdc40 coding upstream 95071 8606208 ~ 8627764 (+)
LOC113529322 gpr6,LOC107739193,LOC107564602,LOC107667838,LOC101067178 coding upstream 206278 8514764 ~ 8516557 (+)
fig4a fig4 coding upstream 214138 8451370 ~ 8508697 (+)
irf4l LOC108274592 coding upstream 331573 8388136 ~ 8391262 (+)
LOC113528867 LOC108439581,LOC108256302 coding downstream 664636 9387830 ~ 9442474 (+)
erh ERH,erh,LOC100699790,LOC101174968 coding downstream 747480 9470674 ~ 9475067 (+)
smek1 ppp4r3a,smek1,LOC107726626,LOC107555622,LOC107698404,LOC107601285,LOC107696138 coding downstream 752101 9475295 ~ 9493602 (+)
nbas nbas,LOC108439588,LOC108442060 coding downstream 936333 9659527 ~ 9846960 (+)
nr2e1 nr2e1,LOC107726424,LOC107726614,LOC107602776,LOC107601200 coding downstream 1444087 10167281 ~ 10175121 (+)
G410070 NA non-coding upstream 677 8721941 ~ 8722158 (+)
G410065 NA non-coding upstream 3895 8717922 ~ 8718940 (+)
G410061 ust non-coding upstream 20451 8701950 ~ 8702384 (+)
G409997 NA non-coding upstream 193787 8527621 ~ 8529048 (+)
G409899 NA non-coding upstream 310776 8409707 ~ 8412059 (+)
G410074 NA non-coding downstream 947 8724141 ~ 8724345 (+)
G410075 NA non-coding downstream 1507 8724701 ~ 8725224 (+)
G410084 NA non-coding downstream 13442 8736636 ~ 8736845 (+)
G410145 NA non-coding downstream 143551 8866745 ~ 8867271 (+)
G410244 NA non-coding downstream 381756 9104950 ~ 9105151 (+)
G409600 NA other upstream 844290 7877795 ~ 7878545 (+)
LOC117596594 NA other upstream 1651802 6764911 ~ 7071033 (+)
LOC117596573 LOC108280157 other upstream 1983308 6613273 ~ 6739527 (+)
LOC117596581 NA other upstream 2068817 6633365 ~ 6654018 (+)
G408929 NA other upstream 2080337 6556363 ~ 6642498 (+)
LOC113529148 NA other downstream 375183 9098377 ~ 9104224 (+)
G410936 snx3 other downstream 1454855 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 1474522 10197716 ~ 10230807 (+)
armc2 armc2 other downstream 1512787 10235981 ~ 10295205 (+)
G411297 NA other downstream 2041020 10764214 ~ 10764729 (+)

Expression


Co-expression Network