smek1 (ppp4r3a,smek1,LOC107726626,LOC107555622,LOC107698404,LOC107601285,LOC107696138)


Basic Information

Item Value
gene id smek1
gene name ppp4r3a,smek1,LOC107726626,LOC107555622,LOC107698404,LOC107601285,LOC107696138
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 9475295 ~ 9493602 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917778.2
TGCGATCTCGGCGAGGGAAACCCTGTAGTAGCTTTCTGAGGGGACCCAAGATGGCCGAACACTTACAGTGGGGCTAATCGCTGATCTCCTTATAGACATTGTCATTTGATGGTGTTCAGCGCTCACGTTACACATTTATAGTACCGGAAAGTCGGACGAGTTTGCCCATTCGACCAGTTGGGTTTTGTAATGTCCGTCTGTGTATGAGGAGAGAGGCTGGTCCTTCTACGGCCCGCAGCCAGAACATGGCGGAACACTTGGACAAAATATAGCTTTGCTGCTAGGCTGCAGACTCGCTTATAATGAAAACACTGTACCGTATGTGGCTCTTTCAACACTTCATGAACACAGCGTGTTTATAATGGGCCATTAAGGTATCGGTACCGCTTTAGAATTTTTTCTACACTCGGTTAGACATAAATTAGAGTCACAATGTTGAAGGCGAGCAGATAGCCTGCTAGCTGACTCGCTAGGACAGCTAGCTTAGCTAACTAGTGTTTGGCTCCGTTTGCTCGTAGCAGTTATCAGATGTGAGAGGGCGTCCGAAAttatatgtgtgttattataaatatatatatttcctccTGCTGAGTTGTACGTATCTGATGCGAATTTTCACGTTGCCTGCACGCCCACAGCCAGACAGACTTCAAAGTATAAAGTTATCCACGTTTGGGTGATAATTGAAGGACTATGTTGCGGCTAAGTGTCAGTGTGCAGCTAGCCAGCGTTAGCGCCGCGCGTCATTAGCGGGACAACAGGTAGGGTGTAAATGTCCAGTTCAGACGGAGCCGTGCAGCGGAGAGTCTAACGAGAGGACGAATCCGGTTCTGGGAGTAATATCTGTGTAACAAGGCAAACAAAACTCCGAACCTAAAGAGTTGACTCGCAAGAATGACTGACACTCGGCGACGAGTGAAGGTCTACACTTTGAATGAAGACCGGCAGTGGGATGACCGGGGCACGGGGCATGTTTCCTCCGGCTATGTGGAAAGACTCAAAGGCATGTCTCTGCTGGTGCGGGCGGAGAGCGACGGGTCTCTGTTGCTGGAGTCAAAAATCAACCCCAATACAGCATATCAGAAACAGCAGGACACATTGATTGTTTGGTCTGAAGCTGAAAACTATGACCTGGCCCTCAGCTTTCAGGAGAAGGCTGGTTGTGATGAGATCTGGGAGAAGATATGTCAGGTTCAGGGTAAGGACCCATCGGTGGACATCACCCAGGAGCTGATCGATGAGTCAGAGGAGGAGCGTTTTGAGGACATGTCCTCTCCCGGTCTGGAATTGCCGCCGTGTGAGCTCTCGCGCTTGGAGGAGGTGGCTGAGCTGGTGGCGTCTTCACTGCCGTCTCCGCTGCGGCGCGAGAAGCTGGCGCTGGCGCTGGAGAACGAGGGCTACATCCGCAAGCTCCTGGAGCTGTTTCGTGTGTGTGAGGACTTGGAGAACCGCGAAGGCCTGCACCACTTGTACGACATTGTCAAGGGTATCTTCCTGCTAAACCGTACAGCTCTCTTCGAGGTTATGTTCTCCGATGAGTGTATCATGGACGTGATCGGATGCCTGGAGTTCGATCCGGCGTTGCCACAGCCGCGCCGCCACCGCGAGTTCCTTACCACCACGGCTCGCTTCAAGGAGGTTATTCCCATCACAGACCCTGAACTGCGCCAGAAGATCCACCAGACATACCGTGTGCAGTACATCCAGGACATGGTGCTGCCTACACCCTCTGTGTTTGAAGAGAACATGCTCTCCACCCTGcactcattcatcttcttcAACAAGGTGGAGATTGTCGGTATGCTCCAGGACGATGAGAAGTTTCTAACTGAGCTCTTTGCACAGCTAACAGATGAAGCCACAGACGATGACAAACGGCAAGAACTGGTCAATTTTCTGAAGGAGTTTTGCGCCTTCTCTCAGACTTTACAGCCACAAAACAGAGATGCGTTCTTCAAGACCCTCTCCAACATGGGAATTCTGCCAGCGTTGGAAGTTATACTGGGGATGGATGATGTGCAAGTGCGGGGTGCGGCTACAGATATCTTCTCTTACCTGGTGGAGTACAACCCCTCTATGGTGCGCGAGTTTGTCATGCAGGAGTCCCAGCAGAATGATGACGATATCTTGCTGATTAATCTGATCATTGAGCACATGATCTGTGATACGGACCCTGAGCTGGGGGGAGCCGTGCAGCTAATGGGGCTACTGAGGACCCTAGTGGACCCTGAAAACATGCTGGCAACCGCTAATaaaacagaaaagacagaGTTTTTAAGTTTCTTCTATAAGCATTGCATGCATGTGCTCTCTGCTCCATTACTGGCTAATACCACTGAGGAGAAACCCAGCAAAGATGATTTCCAGACATGCCAGTTGTTGGCACTGATTGTGGAGCTCCTCACTTTCTGTGTGGAACATCACACATATCACATAAAGAACTACATTATCAACAAAGACATTCTGCGCAGAGTGTTGGTGCTCACTGCATCCCAGCATGCCTTTCTAGCTCTCTGTTCTTTGCGTTTTATGAGGAAAATTGTCGGCCTGAAGGACGAATTCTACAACCGCTATATCATGAGGAACTTCCTGTTTGAGCCAGTGGTCAAAGCGTTCCTCAACAACGGTTCCCGATACAACCTCATCAACTCAGCCATCATAGAGATGTTTGAATATGTGCGTGTGGAGGATGTGAAGTCTCTGACGGCTCATATAATAGAGAACTACTGGAAGGCCCTGGAGGATGTGGACTACGTCCAGACGTTTAAGGGCCTCAAGCTTCGGTATGAGCAGCAGAGGGAAAGGCAGGACAACCCCAAACTCGACAGCAGCATGCGATCAATTCTACGAAACCACCGTTTTCGGCGGGACGCGAGGACGTTGGAGGACGAGGAGGAAATGTGGTTTAATGATGAAGAAGACTTGGAGGACGGAGAGGCGGTAGTGCCACCctcagacaaaatgaagaatgATGAGGACCTGATGGACCCTATCAGCAAGTtcatggaaagaaagaaattaaaAGAGGCAGAGGAAAAAGAGGTTTTGTCGGGGAAATCTAGCTTGTCTGGGAGACAGAGCCCCAGTTTTAAGCTGTCCTTCTCCAGCTCGACCAAGCCCAGTCTGTCTTCACCTCCCACAGCCTCACTGCATCCTGGCTCGCCCGGATCACCGGGATCCCCTGGCACGGGGACCAGGAACTCTCCGCCCACGGCAGCTGTCACCACGAAGGGTGGTTTGGTGGGACTTGTGGACTATCCTGATGacgatgaggatgatgaggatgaagaagatTCGGACAATAAAGAGGAGAGCCCTCCGCTTTCCAAGAAATCAAAGCTGAGCTCCTAAAACACTCCCCTGCCCACCTGGCACGGTAAAGCTCGGAGGGAGCCTTATCTACAAACTCATTTCAGCGCTCAGCCTAGAACTCAGAATTCAACCAATATGAacgaataaacaaatgaatggatAAAAGAATGAATGCTGCCCCCATAACCCCCATCAGCAGTCCAAGCAGGGGTTTGCCATGTGGaaacagagaaagggagagcaAGAAAGAGGGAAGAAGAATCGGTCTCGGAGCGAAGAGGAGAACGTCTCCATGCGGGGAGTTCAAGTGCCAATCGGAGACGGAGTGAAAGAGACTCAGAGCAGAAAGAGAGCAAGATAAAACTGTGGGTTTGGACAAATGATTGAaaggatttaataaaaataatttcaacaaaGCTAAAAGTACTGGGgggtaaaaaacacacacatgcacacacacaccctctctcacGGAGACTGGTGCCCTATAAAGCGTCCCAGGCTCGGACCAGGACACACTGCCCCCCCTCTCAGGGAAGGACGCCACATGACCCAAATGGGCCAGCCAATCCTGAACCACCGCTCACCTTCGCTGATTCCattctccatttctttctctctttcctctatCCCTTTTTTTCTGCCccttttggtcttttttttttttaattaacctcttttggtttttgtttctGGAGCCTGACAGAATCCCGGGGGCAGAACAGTCTGGGTTGTCATTGTTGATGTCATCGTTGTCCTTGTGGCTCAGCGGAAGTTCTTCCTCTTTCAAAGCCAGCGGTTTCctcgttttttttcttgttctgttcttctcttcctctcccttttttaaaatgaaaaaagagaccTGCCTTTAAATGTTCAGGACGTTTTCAGTCGCACTTGAACAGGTTTTTAAAACCTCATTAGGGGGAAGAGTTAgttttaccctttttttttttgccctttgaAACTGCagattttttggaaaatttgtaAGCCTGTCTTGATTAAAGATTGAGTGGAACTCTAGATGtgattgattttttcccccctttttgtcatatcttcatttttcttttacatgagTGTACTCTTAGTTGGTGGGTATGTTTGGGACCATTAAAAAGATTTTTGCTGTAATATA
>XM_026917779.2
TGCGATCTCGGCGAGGGAAACCCTGTAGTAGCTTTCTGAGGGGACCCAAGATGGCCGAACACTTACAGTGGGGCTAATCGCTGATCTCCTTATAGACATTGTCATTTGATGGTGTTCAGCGCTCACGTTACACATTTATAGTACCGGAAAGTCGGACGAGTTTGCCCATTCGACCAGTTGGGTTTTGTAATGTCCGTCTGTGTATGAGGAGAGAGGCTGGTCCTTCTACGGCCCGCAGCCAGAACATGGCGGAACACTTGGACAAAATATAGCTTTGCTGCTAGGCTGCAGACTCGCTTATAATGAAAACACTGTACCGTATGTGGCTCTTTCAACACTTCATGAACACAGCGTGTTTATAATGGGCCATTAAGGTATCGGTACCGCTTTAGAATTTTTTCTACACTCGGTTAGACATAAATTAGAGTCACAATGTTGAAGGCGAGCAGATAGCCTGCTAGCTGACTCGCTAGGACAGCTAGCTTAGCTAACTAGTGTTTGGCTCCGTTTGCTCGTAGCAGTTATCAGATGTGAGAGGGCGTCCGAAAttatatgtgtgttattataaatatatatatttcctccTGCTGAGTTGTACGTATCTGATGCGAATTTTCACGTTGCCTGCACGCCCACAGCCAGACAGACTTCAAAGTATAAAGTTATCCACGTTTGGGTGATAATTGAAGGACTATGTTGCGGCTAAGTGTCAGTGTGCAGCTAGCCAGCGTTAGCGCCGCGCGTCATTAGCGGGACAACAGGTAGGGTGTAAATGTCCAGTTCAGACGGAGCCGTGCAGCGGAGAGTCTAACGAGAGGACGAATCCGGTTCTGGGAGTAATATCTGTGTAACAAGGCAAACAAAACTCCGAACCTAAAGAGTTGACTCGCAAGAATGACTGACACTCGGCGACGAGTGAAGGTCTACACTTTGAATGAAGACCGGCAGTGGGATGACCGGGGCACGGGGCATGTTTCCTCCGGCTATGTGGAAAGACTCAAAGGCATGTCTCTGCTGGTGCGGGCGGAGAGCGACGGGTCTCTGTTGCTGGAGTCAAAAATCAACCCCAATACAGCATATCAGAAACAGCAGGACACATTGATTGTTTGGTCTGAAGCTGAAAACTATGACCTGGCCCTCAGCTTTCAGGAGAAGGCTGGTTGTGATGAGATCTGGGAGAAGATATGTCAGGTTCAGGGTAAGGACCCATCGGTGGACATCACCCAGGAGCTGATCGATGAGTCAGAGGAGGAGCGTTTTGAGGACATGTCCTCTCCCGGTCTGGAATTGCCGCCGTGTGAGCTCTCGCGCTTGGAGGAGGTGGCTGAGCTGGTGGCGTCTTCACTGCCGTCTCCGCTGCGGCGCGAGAAGCTGGCGCTGGCGCTGGAGAACGAGGGCTACATCCGCAAGCTCCTGGAGCTGTTTCGTGTGTGTGAGGACTTGGAGAACCGCGAAGGCCTGCACCACTTGTACGACATTGTCAAGGGTATCTTCCTGCTAAACCGTACAGCTCTCTTCGAGGTTATGTTCTCCGATGAGTGTATCATGGACGTGATCGGATGCCTGGAGTTCGATCCGGCGTTGCCACAGCCGCGCCGCCACCGCGAGTTCCTTACCACCACGGCTCGCTTCAAGGAGGTTATTCCCATCACAGACCCTGAACTGCGCCAGAAGATCCACCAGACATACCGTGTGCAGTACATCCAGGACATGGTGCTGCCTACACCCTCTGTGTTTGAAGAGAACATGCTCTCCACCCTGcactcattcatcttcttcAACAAGGTGGAGATTGTCGGTATGCTCCAGGACGATGAGAAGTTTCTAACTGAGCTCTTTGCACAGCTAACAGATGAAGCCACAGACGATGACAAACGGCAAGAACTGGTCAATTTTCTGAAGGAGTTTTGCGCCTTCTCTCAGACTTTACAGCCACAAAACAGAGATGCGTTCTTCAAGACCCTCTCCAACATGGGAATTCTGCCAGCGTTGGAAGTTATACTGGGGATGGATGATGTGCAAGTGCGGGGTGCGGCTACAGATATCTTCTCTTACCTGGTGGAGTACAACCCCTCTATGGTGCGCGAGTTTGTCATGCAGGAGTCCCAGCAGAATGATGACGATATCTTGCTGATTAATCTGATCATTGAGCACATGATCTGTGATACGGACCCTGAGCTGGGGGGAGCCGTGCAGCTAATGGGGCTACTGAGGACCCTAGTGGACCCTGAAAACATGCTGGCAACCGCTAATaaaacagaaaagacagaGTTTTTAAGTTTCTTCTATAAGCATTGCATGCATGTGCTCTCTGCTCCATTACTGGCTAATACCACTGAGGAGAAACCCAGCAAAGATGATTTCCAGACATGCCAGTTGTTGGCACTGATTGTGGAGCTCCTCACTTTCTGTGTGGAACATCACACATATCACATAAAGAACTACATTATCAACAAAGACATTCTGCGCAGAGTGTTGGTGCTCACTGCATCCCAGCATGCCTTTCTAGCTCTCTGTTCTTTGCGTTTTATGAGGAAAATTGTCGGCCTGAAGGACGAATTCTACAACCGCTATATCATGAGGAACTTCCTGTTTGAGCCAGTGGTCAAAGCGTTCCTCAACAACGGTTCCCGATACAACCTCATCAACTCAGCCATCATAGAGATGTTTGAATATGTGCGTGTGGAGGATGTGAAGTCTCTGACGGCTCATATAATAGAGAACTACTGGAAGGCCCTGGAGGATGTGGACTACGTCCAGACGTTTAAGGGCCTCAAGCTTCGGTATGAGCAGCAGAGGGAAAGGCAGGACAACCCCAAACTCGACAGCATGCGATCAATTCTACGAAACCACCGTTTTCGGCGGGACGCGAGGACGTTGGAGGACGAGGAGGAAATGTGGTTTAATGATGAAGAAGACTTGGAGGACGGAGAGGCGGTAGTGCCACCctcagacaaaatgaagaatgATGAGGACCTGATGGACCCTATCAGCAAGTtcatggaaagaaagaaattaaaAGAGGCAGAGGAAAAAGAGGTTTTGTCGGGGAAATCTAGCTTGTCTGGGAGACAGAGCCCCAGTTTTAAGCTGTCCTTCTCCAGCTCGACCAAGCCCAGTCTGTCTTCACCTCCCACAGCCTCACTGCATCCTGGCTCGCCCGGATCACCGGGATCCCCTGGCACGGGGACCAGGAACTCTCCGCCCACGGCAGCTGTCACCACGAAGGGTGGTTTGGTGGGACTTGTGGACTATCCTGATGacgatgaggatgatgaggatgaagaagatTCGGACAATAAAGAGGAGAGCCCTCCGCTTTCCAAGAAATCAAAGCTGAGCTCCTAAAACACTCCCCTGCCCACCTGGCACGGTAAAGCTCGGAGGGAGCCTTATCTACAAACTCATTTCAGCGCTCAGCCTAGAACTCAGAATTCAACCAATATGAacgaataaacaaatgaatggatAAAAGAATGAATGCTGCCCCCATAACCCCCATCAGCAGTCCAAGCAGGGGTTTGCCATGTGGaaacagagaaagggagagcaAGAAAGAGGGAAGAAGAATCGGTCTCGGAGCGAAGAGGAGAACGTCTCCATGCGGGGAGTTCAAGTGCCAATCGGAGACGGAGTGAAAGAGACTCAGAGCAGAAAGAGAGCAAGATAAAACTGTGGGTTTGGACAAATGATTGAaaggatttaataaaaataatttcaacaaaGCTAAAAGTACTGGGgggtaaaaaacacacacatgcacacacacaccctctctcacGGAGACTGGTGCCCTATAAAGCGTCCCAGGCTCGGACCAGGACACACTGCCCCCCCTCTCAGGGAAGGACGCCACATGACCCAAATGGGCCAGCCAATCCTGAACCACCGCTCACCTTCGCTGATTCCattctccatttctttctctctttcctctatCCCTTTTTTTCTGCCccttttggtcttttttttttttaattaacctcttttggtttttgtttctGGAGCCTGACAGAATCCCGGGGGCAGAACAGTCTGGGTTGTCATTGTTGATGTCATCGTTGTCCTTGTGGCTCAGCGGAAGTTCTTCCTCTTTCAAAGCCAGCGGTTTCctcgttttttttcttgttctgttcttctcttcctctcccttttttaaaatgaaaaaagagaccTGCCTTTAAATGTTCAGGACGTTTTCAGTCGCACTTGAACAGGTTTTTAAAACCTCATTAGGGGGAAGAGTTAgttttaccctttttttttttgccctttgaAACTGCagattttttggaaaatttgtaAGCCTGTCTTGATTAAAGATTGAGTGGAACTCTAGATGtgattgattttttcccccctttttgtcatatcttcatttttcttttacatgagTGTACTCTTAGTTGGTGGGTATGTTTGGGACCATTAAAAAGATTTTTGCTGTAATATA

Function

symbol description
smek1 Orthologous to human PPP4R3A (protein phosphatase 4 regulatory subunit 3A).
ppp4r3a Predicted to act upstream of or within positive regulation of gluconeogenesis and protein dephosphorylation. Located in cytosol and nuclear speck.

NR:

description
PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3A isoform X4

GO: NA

KEGG:

id description
K17491 SMEK, PPP4R3; protein phosphatase 4 regulatory subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917778.2 True 4456 mRNA 0.49 15 9475295 9493602
XM_026917779.2 False 4453 mRNA 0.49 15 9475295 9493602

Neighbor

gene id symbol gene type direction distance location
erh ERH,erh,LOC100699790,LOC101174968 coding upstream 228 9470674 ~ 9475067 (+)
LOC113528867 LOC108439581,LOC108256302 coding upstream 32821 9387830 ~ 9442474 (+)
slc22a16 slc22a16,LOC107602826,LOC107726421,LOC107696098,LOC107693213 coding upstream 783591 8678600 ~ 8691704 (+)
cdc40 cdc40 coding upstream 847531 8606208 ~ 8627764 (+)
LOC113529322 gpr6,LOC107739193,LOC107564602,LOC107667838,LOC101067178 coding upstream 958738 8514764 ~ 8516557 (+)
nbas nbas,LOC108439588,LOC108442060 coding downstream 165925 9659527 ~ 9846960 (+)
nr2e1 nr2e1,LOC107726424,LOC107726614,LOC107602776,LOC107601200 coding downstream 673679 10167281 ~ 10175121 (+)
foxo3b foxo3,LOC108436468 coding downstream 740314 10233916 ~ 10263830 (+)
cep57l1 cep57l1 coding downstream 850720 10344322 ~ 10351287 (+)
grm1a grm1,grm1a,LOC108279026,LOC108436473,LOC107679500,LOC107726479,LOC107696122 coding downstream 881796 10375398 ~ 10396031 (+)
G410596 NA non-coding upstream 11049 9463963 ~ 9464246 (+)
G410549 NA non-coding upstream 31939 9442994 ~ 9443356 (+)
G410539 NA non-coding upstream 99455 9375106 ~ 9375840 (+)
LOC113528860 NA non-coding upstream 190824 9277036 ~ 9284471 (+)
G410465 NA non-coding upstream 231502 9211551 ~ 9243793 (+)
G410627 NA non-coding downstream 73836 9567438 ~ 9567710 (+)
G410649 NA non-coding downstream 153086 9646688 ~ 9647686 (+)
G410885 NA non-coding downstream 611237 10104839 ~ 10107506 (+)
G410916 NA non-coding downstream 616628 10110230 ~ 10112142 (+)
G410929 NA non-coding downstream 671976 10165578 ~ 10248321 (+)
LOC113529148 NA other upstream 371071 9098377 ~ 9104224 (+)
G409600 NA other upstream 1596750 7877795 ~ 7878545 (+)
LOC117596594 NA other upstream 2404262 6764911 ~ 7071033 (+)
LOC117596573 LOC108280157 other upstream 2735768 6613273 ~ 6739527 (+)
G410936 snx3 other downstream 684447 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 704114 10197716 ~ 10230807 (+)
armc2 armc2 other downstream 742379 10235981 ~ 10295205 (+)
G411297 NA other downstream 1270612 10764214 ~ 10764729 (+)
aig1 aig1,LOC107675100,LOC107689442,LOC106607822 other downstream 1621971 11115573 ~ 11153005 (+)

Expression


Co-expression Network