G410465


Basic Information

Item Value
gene id G410465
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 9211551 ~ 9243793 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU487218
atcgcagaattctttccttggtgaaggggtttttcttcaccaaggaaagggtTCTGCGATCattcactttagttgtcttccatggtcttccaggcctttcgatgttgttgagctcaccagtgctttctttctttttaagaatatacccagctgttgatttggccacacctaaggtttttgctatctctcttatagatttatgttgttttttcagcctaatgatggcctccttcacttgcattgagatctccttggacttcatattggtagctccagtcgaacagctgccaaatgccaactcaatacctggatatcaactccagaccttttatctgcttcatttgtcttgaagtaacgagggaatggatcACACCTGGTCAAtgaacttcttgtcagtcaattgtccaaatacctttgagcccctgaaaatggaggtactttgttgaaaatggctgtaattcctaaatggtaaatgccatatttttgtggaacctcttaaaataaagctgaaagtctacacttcaatcacatcttgattgttttattttaaatccattgtggtggtgtataaaggcaaaatcacaaaaacttcgtcattgtccaaatacttccagacctgactgtatataaatgtatatacactatattaccaaaagtattcggtcacctgccttgactcacatatgaacttaagtgccatcccattcctaacccatagggttcaatatgatgtcggtccaccttttgcagctattacagcttcaactcttctgggaaggctgtccacaaggttgagaagtgtgtttataggaatttttgaccattcttccaaaagcgcattggtgaggtcacacactgatgttggtcgagaaggcctggctctcagtctccgctctaattcatcccaaaggtgttctatcgggttcaggtcaggactctgtgcaggccagtcaagttcatccacaccagactctgtcatccatgtctttatggaccttgctttgtgcactggtgcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU487218 True 1017 lncRNA 0.42 2 9211551 9243793

Neighbor

gene id symbol gene type direction distance location
slc22a16 slc22a16,LOC107602826,LOC107726421,LOC107696098,LOC107693213 coding upstream 519847 8678600 ~ 8691704 (+)
cdc40 cdc40 coding upstream 583787 8606208 ~ 8627764 (+)
LOC113529322 gpr6,LOC107739193,LOC107564602,LOC107667838,LOC101067178 coding upstream 694994 8514764 ~ 8516557 (+)
fig4a fig4 coding upstream 702854 8451370 ~ 8508697 (+)
irf4l LOC108274592 coding upstream 820289 8388136 ~ 8391262 (+)
LOC113528867 LOC108439581,LOC108256302 coding downstream 144037 9387830 ~ 9442474 (+)
erh ERH,erh,LOC100699790,LOC101174968 coding downstream 226881 9470674 ~ 9475067 (+)
smek1 ppp4r3a,smek1,LOC107726626,LOC107555622,LOC107698404,LOC107601285,LOC107696138 coding downstream 231502 9475295 ~ 9493602 (+)
nbas nbas,LOC108439588,LOC108442060 coding downstream 415734 9659527 ~ 9846960 (+)
nr2e1 nr2e1,LOC107726424,LOC107726614,LOC107602776,LOC107601200 coding downstream 923488 10167281 ~ 10175121 (+)
G410456 NA non-coding upstream 94544 9116145 ~ 9117007 (+)
G410250 NA non-coding upstream 103015 9108323 ~ 9108536 (+)
G410244 NA non-coding upstream 106400 9104950 ~ 9105151 (+)
G410145 NA non-coding upstream 344280 8866745 ~ 8867271 (+)
G410084 NA non-coding upstream 474706 8736636 ~ 8736845 (+)
LOC113528860 NA non-coding downstream 33243 9277036 ~ 9284471 (+)
G410539 NA non-coding downstream 131313 9375106 ~ 9375840 (+)
G410549 NA non-coding downstream 199201 9442994 ~ 9443356 (+)
G410596 NA non-coding downstream 220170 9463963 ~ 9464246 (+)
G410627 NA non-coding downstream 323645 9567438 ~ 9567710 (+)
LOC113529148 NA other upstream 107327 9098377 ~ 9104224 (+)
G409600 NA other upstream 1333006 7877795 ~ 7878545 (+)
LOC117596594 NA other upstream 2140518 6764911 ~ 7071033 (+)
LOC117596573 LOC108280157 other upstream 2472024 6613273 ~ 6739527 (+)
G410936 snx3 other downstream 934256 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 953923 10197716 ~ 10230807 (+)
armc2 armc2 other downstream 992188 10235981 ~ 10295205 (+)
G411297 NA other downstream 1520421 10764214 ~ 10764729 (+)
aig1 aig1,LOC107675100,LOC107689442,LOC106607822 other downstream 1871780 11115573 ~ 11153005 (+)

Expression


Co-expression Network