G410649


Basic Information

Item Value
gene id G410649
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 9646688 ~ 9647686 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU487430
cacacaaacacatacacacgcacctCCAGCAGCTCGACGCTGGCCGTAAGTAACCTTGCCATCAAATTCGTCTACGGGGACTTTGATGTCCGGCTCGCACTGAGTAATGGTGCACTTCAGGTGGTCTTCGATTTCTCCCAACAGctTTTCTCGTTGTACCATATAGTGCAGCCTCCTTCCTCCTTTAACCTGGTGTTATAGCAGCCTCGGCCTCTGTTAGGACAAACATGATaccatacctacacacacacacacacacacacacattaacatttccaaaacatgactcccacacacacacacacattaacattaacatttccaAAATAtgactcctacacacacacatacacgggTCGTGTGTTCAAAACTcattccttcacacacacacacacacacacacacacacacagtctgaacATATGACCAAAACATACCACACCTACATGGCTTTTAAGTTCTTACTGCACCATCACATTACACCTACATATGCTGGTCTAAacatatttcagaaatatttccaaacccacacacacagcttcagcaTGTGCATTtctacatgtgattttttttgcctttaccTTCTCTTTTTCCATGGCCACCAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU487430 True 607 lncRNA 0.44 2 9646688 9647686

Neighbor

gene id symbol gene type direction distance location
smek1 ppp4r3a,smek1,LOC107726626,LOC107555622,LOC107698404,LOC107601285,LOC107696138 coding upstream 153086 9475295 ~ 9493602 (+)
erh ERH,erh,LOC100699790,LOC101174968 coding upstream 171621 9470674 ~ 9475067 (+)
LOC113528867 LOC108439581,LOC108256302 coding upstream 204214 9387830 ~ 9442474 (+)
slc22a16 slc22a16,LOC107602826,LOC107726421,LOC107696098,LOC107693213 coding upstream 954984 8678600 ~ 8691704 (+)
cdc40 cdc40 coding upstream 1018924 8606208 ~ 8627764 (+)
nbas nbas,LOC108439588,LOC108442060 coding downstream 11841 9659527 ~ 9846960 (+)
nr2e1 nr2e1,LOC107726424,LOC107726614,LOC107602776,LOC107601200 coding downstream 519595 10167281 ~ 10175121 (+)
foxo3b foxo3,LOC108436468 coding downstream 586230 10233916 ~ 10263830 (+)
cep57l1 cep57l1 coding downstream 696636 10344322 ~ 10351287 (+)
grm1a grm1,grm1a,LOC108279026,LOC108436473,LOC107679500,LOC107726479,LOC107696122 coding downstream 727712 10375398 ~ 10396031 (+)
G410627 NA non-coding upstream 78978 9567438 ~ 9567710 (+)
G410596 NA non-coding upstream 182442 9463963 ~ 9464246 (+)
G410549 NA non-coding upstream 203332 9442994 ~ 9443356 (+)
G410539 NA non-coding upstream 270848 9375106 ~ 9375840 (+)
LOC113528860 NA non-coding upstream 362217 9277036 ~ 9284471 (+)
G410885 NA non-coding downstream 457153 10104839 ~ 10107506 (+)
G410916 NA non-coding downstream 462544 10110230 ~ 10112142 (+)
G410929 NA non-coding downstream 517892 10165578 ~ 10248321 (+)
G410953 NA non-coding downstream 545699 10193385 ~ 10197489 (+)
G410937 NA non-coding downstream 644371 10292057 ~ 10360477 (+)
LOC113529148 NA other upstream 542464 9098377 ~ 9104224 (+)
G409600 NA other upstream 1768143 7877795 ~ 7878545 (+)
LOC117596594 NA other upstream 2575655 6764911 ~ 7071033 (+)
LOC117596573 LOC108280157 other upstream 2907161 6613273 ~ 6739527 (+)
G410936 snx3 other downstream 530363 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 550030 10197716 ~ 10230807 (+)
armc2 armc2 other downstream 588295 10235981 ~ 10295205 (+)
G411297 NA other downstream 1116528 10764214 ~ 10764729 (+)
aig1 aig1,LOC107675100,LOC107689442,LOC106607822 other downstream 1467887 11115573 ~ 11153005 (+)

Expression


Co-expression Network