G409899


Basic Information

Item Value
gene id G409899
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 8409707 ~ 8412059 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU486585
TTTATTTGATCAGTAGTTTATTGCCTCAATAAAGAAATACAGTACAGTCTTGTACCAAGCCTGTACCTCCTAAAAATAGTAAGCAAATTTCATCATACATGTATTATTGGCATTGTTTATGATACAGACCATGTCCTGAGACAGGGGTAGTTTCTGTACATATGATGAACACAAGGGACTGTAGATATTGTGTCCAAAACAGGATTAAATtgaaaacacatatatatatgatttttttatttagaaaattacggaaaaaaaaaaagtgtttcagaTCACAGATATTAAGACCAAGGTCAACTGCATTAGAACCATATTTACGGCTTTGTGGCACAAGACAAAAGACCAGAATATGAGTGAGAATTTCATCAGAATATTCATGTTGTAATGTTCAATtacaaaaaagcaaatattcaacaaaaatgaatatttttttaatcaactgGATTGGCTTTTAGTTTCTTCTAGCTTCTGTCTTACTGGTCACTTATTGGTGACTACATATTAGAttactacaaaaataaataatctcaaCATAGcttttgcacttttattttctttccaatTTAGGCAAAATCAAAGTCTCATATtacaaaatttatatataatttttacatttgctTATGTACAAAGATCTAGCTAgctttattcacaaaaaaagcttttagaCAATTTTAAAGCCAAATGCTGCTATCCCTCAATCCCTCTCAGACatataatatctaatatttatttCCTAGAAAATATATATACCAACCTTGACCCACTCAATATATGCTACATTGTGCAAAAGCACAATATACCCATTTAAAGTAAACATTTGGcttgaacacattaatatagaATGCAATAACATAAATTTTTGAATTTGTGCActcaaattatattttatgagcagtgaaagaaaaaatcGTTAGCGACATTCAGACTGGGAAAACTGAAACTCAGATCTTAAATTAACAGGAGATCATTAATTTAGCTTCAAACTATTTATCTTTAAACAAACCAGAAATTTGCAAACAAAAGCTGGTTAGCATTAGGAGAGTATGCCCAAACAAAACTAACTAGTGAGGAGAACAACTAGCTAATTAGTTCCAGACAAAAGTAATTAGCTAAGATTAGTGAAAAATCCCCaaacaaagctagctagctttaggaAAATATCCCCAAACAAAACTACCTAGGCAACATTAGCAAAAATCCAAAACTAGCTAGCATGAACAGAATATCCCTAAACAAAACTAACTAGCTTAGATTACAGAAAGCCACAAATAAAGCTAGCTAGTATGAACACAATATCCCTAAACAAAAGTAAGCAGCATTAGGAGAAGCATTAGGAGAATATTTCCACACTAAAAtgactagctaacattagtggaAAAACACCAAACAAAGCCAGCCATCTTTAAAAATTACCCACACTAAAGCTAGCTAGCGAAGGTTTGAAAATGTATACCGATGTATCAGGATCAGTTGATGACAACAGGGAAATATTCTTTAACTCAATTTGGGGAAAACCTGAGCTTTATTTATTAGTACTGTTTTTGTTGGTTGGGGCTGCACACTGATCCTGTGACACTTATCCTAAAAAGTGTGATATTGGGTTGTACGGTTATCTATCTAGCTGCAACTGCTTTACTGGGGCattaaaatgacatgtttatttttgaagTAACAGCAATATATTTTGGCTGCATATACACTAATGATGAGGACCAGAAATAATGCTAAAGGTAAATAATAGAAACAAACTGCACAACATAAGAGGGACCATGAGAATGAGTTTCCTATACAAATtatgcagaaaaagaaaaaaaaaatcatcactgtGATAAgcacatgaaaatgttttatacattCCTAACAGTCTTTGATGTGTTTGTTGGGTTGGATGGGGTAGAGAGCGTTTGGGATACAGGACAGACTCAGCGGCCCTGCATGTCAGCACTGTTTGGAGACTGATTGGCGTTTAGATACTGCCAGCTGAAAAAAGCCAAAATCGTAGCAGCAGAAAGATAAACATGTGAGAAGTGGTAGGTACGGGAGGGCAGCGCTGCCTTGGACAGTGTCTTTTCCTGGATCACACCGAGTATGCACAGAGTGTTAGCCCGCGACGGATCAGACAGCGACACTTTCTGCAGGATCTAAGGGGAGAGGATGAGGATTACACTCGATTAGGATTAGGAGGACAAGAAAAGCAGTTGGTGGGAAATAACTTGTTTACTGTCCATCAGATTGGGAAAGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU486585 True 2247 lncRNA 0.35 2 8409707 8412059

Neighbor

gene id symbol gene type direction distance location
irf4l LOC108274592 coding upstream 18445 8388136 ~ 8391262 (+)
LOC113528738 slc22a23,LOC107739176,LOC100334012,LOC107661357,LOC107557020,LOC107671089,LOC107572585 coding upstream 30443 8360567 ~ 8379264 (+)
phactr1 LOC108260295,LOC108443237 coding upstream 95907 8296810 ~ 8313800 (+)
si:ch211-221n20.8 LOC108261142 coding upstream 114828 8275792 ~ 8294879 (+)
eef1db eef1d,LOC108259081 coding upstream 135459 8263075 ~ 8274248 (+)
fig4a fig4 coding downstream 39311 8451370 ~ 8508697 (+)
LOC113529322 gpr6,LOC107739193,LOC107564602,LOC107667838,LOC101067178 coding downstream 102705 8514764 ~ 8516557 (+)
cdc40 cdc40 coding downstream 194149 8606208 ~ 8627764 (+)
slc22a16 slc22a16,LOC107602826,LOC107726421,LOC107696098,LOC107693213 coding downstream 266541 8678600 ~ 8691704 (+)
LOC113528867 LOC108439581,LOC108256302 coding downstream 975771 9387830 ~ 9442474 (+)
G409896 NA non-coding upstream 14765 8391501 ~ 8394942 (+)
G409693 NA non-coding upstream 284288 8104207 ~ 8125419 (+)
LOC113528831 NA non-coding upstream 475201 7926194 ~ 7934506 (+)
G409603 NA non-coding upstream 527319 7882167 ~ 7882388 (+)
G409602 NA non-coding upstream 530606 7878890 ~ 7879101 (+)
G409997 NA non-coding downstream 115562 8527621 ~ 8529048 (+)
G410061 ust non-coding downstream 289891 8701950 ~ 8702384 (+)
G410065 NA non-coding downstream 305863 8717922 ~ 8718940 (+)
G410070 NA non-coding downstream 309882 8721941 ~ 8722158 (+)
G410072 NA non-coding downstream 310776 8722835 ~ 8723194 (+)
G409600 NA other upstream 531162 7877795 ~ 7878545 (+)
LOC117596594 NA other upstream 1338674 6764911 ~ 7071033 (+)
LOC117596573 LOC108280157 other upstream 1670180 6613273 ~ 6739527 (+)
LOC117596581 NA other upstream 1755689 6633365 ~ 6654018 (+)
G408929 NA other upstream 1767209 6556363 ~ 6642498 (+)
LOC113529148 NA other downstream 686318 9098377 ~ 9104224 (+)
G410936 snx3 other downstream 1765990 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 1785657 10197716 ~ 10230807 (+)
armc2 armc2 other downstream 1823922 10235981 ~ 10295205 (+)
G411297 NA other downstream 2352155 10764214 ~ 10764729 (+)

Expression


Co-expression Network