LOC113528738 (slc22a23,LOC107739176,LOC100334012,LOC107661357,LOC107557020,LOC107671089,LOC107572585)


Basic Information

Item Value
gene id LOC113528738
gene name slc22a23,LOC107739176,LOC100334012,LOC107661357,LOC107557020,LOC107671089,LOC107572585
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 8360567 ~ 8379264 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917421.2
CCCCAAACCATACAGGCAGACTGGTGAAGTAGCAGTAAGACATTTGTGGGTCTGGCCTATTCCCTGAAAGATCCCCCTCTACCACTGATGCAGGGGAAATGGGTGCCATATTGCAAATGATTGAAATAACTAGTCTATGTTAATGAATTGAAATACACCTGCTACAGCTTATCACCTTCATCTGATGTGTAAAATGATCTGAGCAGGGAAGGTTGCACGGACATTTTCGGCATCTAACTTCTTTCGGCGCAGCGCCGTGTTTACAATGGGAGCGCGGGGGAGCGGGTGCACAAAGGTTCTTTGTTGCTCCTCGATCCAATCGCAGGCCGCGGGTAGATCGCCATGAGtgtctcagccaatcagagggcGCGGCGAGACTGTGGAGAAAGGCGTTTCATTTGGATGCTGCGAGCGTGCGCGCGCGCTGACCGACTATGTGTGAAGAATTCATCGCCGGCGAAAAATGGTCGCGTAGCCTGGTACCACGCGTGCAACCAAACACCCATCCTGACTGAGTGACCGCCGCGTGAAGCTGCATTTCCCAGCGTGAACACCGAGATCTACTGACGCGCACCGAACACCGAGGCAcgatgtaataataataataataataatactaattaaaaaaatcgaCAGTTCAGGGATGGGTAGCGGAGCCACGCCTGCCCGAGATCTGCGCATAAACAGGTATGTTACCTGTGGACCTCGGGGACTCCAGGTTTACCAACACATGCTGTGCTTGTGTAAGGGTTCGGCGTCCAGCGTGCCCAGCCGCGCGATGGCATGATCACCTGGAGGATCCACAACGGCGACGGAGGGCAAGTCGATCACCCGAAATGCTCGATTCACGCGGATGACAACACGGCCGTATCTGCCACAATCAGACTATCAAAGCAAACTGGTTTCTAGCTTGCACTGGATTTAGTCTGGGTTTGGGATCTTGTCTGCAGCCGGTTTTAGTGCTTGCGTGTCGGCGTACTGGATCTCAGACAAAGAGCGTCCACAGAGTGGATGTGAGGACGCGGAGAAACCGTTATGGCCTCTCTTCGCTTGCACGGATTGGACCAGCTGCCCGAAAACGGCGGTGTATCGCGAGCACCGGAGTCTCACAGCCCGAAGCTGCTCTCTCAGGTGGACACCGCGGTGCTGCCGTTCCTCGGGGGCTTCGGTCGCTTCCAGAAGCGTCTTGTGGCTCTGACGTGGCTCCCTGCGCTGCTCATCGCTTTCGGTCAGTTCTCGGATTATTTTCTCCTCGCGCAGCCCGAGAGCACGTGCGCCCACCCGAGCGATCCTGCAAGAAACGGGAGCGGCGTGAGCGCGAGCCCCTTGCCGCCGGGTCTGTTCGGTAACGCGACGCGCGctgagagcagcagcagcagcagcgcgcGGTGCAAATGCGCCGAACCGAGGTTTGAGCTCCAGCTGGGACTGCAGCAGAACGTGGTCACTAAGTGGCAGCTGGTGTGTGATGAGGAGTGGAAGGTCCACATCGCCAAGTTCTCATTGCTGGTGGGCTCCATATTTGGTTACCTGCTGATGGGCGCTATGGCGGACTGGATAGGTCGTATTCCGGTGCTGCTTGTATCGGTGTTGTCTGTGCTCGTGTTTGGCTTGTGTGTGGCCTTCTCTGTGGACATGGCCATGTTTAGTACTCTGCGCTTCTTTCAGGGCTTTTGCCTCGCTGCGATCAGACTCTCCCTCTATGTGCTGAGGATTGAGCTGTGTTTGCCCGGTTGGCGCTTCTCCATGACGATGGTTGCCAGTCTGGTGGTGGTGGGCGGGCAGCTGCTGATGCCGGGTCTGGCAGCTCTGTGCCGTGATTGGCAGATTCTTCAGGTCCTCATCATTGTCCCATTCGTCCTAATGCTTCCTTACATTTGGGTTTTTCCCGAGTCTCTGCGTTGGCTGTTGGCCACGCAGCACTATAACAGAGCAAAGAGGCAAATGTACTCTATCGCCCGAAGTAACAAGGTGGACACTGCAACTGACCCTAATGGAATTCTCTCAGAGCTGGAGCGTGAGCTGCAGCAGAAGCCCAGAACCTCCTGTATCACACAGCTGAGAAGCACACGAAACCTGTGGAAGAGCACTGTAGTGCTCTGCGTCAACTCgctgacTGGCTATGGTATCCACCACTGTTTTGCACGCAGTGTTTTGGAGGGCAGCACCTCTCACCTGCACTATTTTGCTCTGGCAGGCATCGCCATGGCCTCGTGTTTGGTGCTTTGTCCAGTGGTGGCAGCATTCGGCAGACGAGGCGGCCTCCTCACCTTCATGATTATCACAGCGCTGGCCTCCTTACTGCAGCTCGGCCTGCTCAGCTTAATCGGAAAGTACAGTCTTCGGCACAATGCAGTTCTCAGGGACACGCTAAATCAGCGGTTCTCTGTGGCGTTTTCCATCATTGGAATGTTCTCGTCTCACGCCGTCAGCACTCTAAGTATCTTCTACTGCACAGAGATCACGCCTACTGTCATCAGgggtgGAGGTGTAGGTTTGGTCCTGGCTAGCGCAGGGTTCGGCATGCTAACTGCTCCACTTATGGAACTTCACAACCAGAAAGGCTTCTTCCTTCACCATGTCATCCTCACATGCTGCACTCTCCTCTGCATCATTTGCATTCCATTGCTGCCTGAGACCACCGGCCAACCGCTGCCTGAAACTCTGGCTGAAGGGGAGGGGCTTTTGCGCAGGCCCCTCCTCCCTGGAGAGCAGCACCACCTTCTGGCCAGGCAAGAGGTCAGGGAGTACTCTCGTGTTCAGGACACGCCTCTTCATCAGGTTGTCAATCCCAGCAACACCACAGCACCTAGTAACAGCACAGCGAACGGAGTGAGGACTTGACTGTGTGCATGCGCTGCGTGAATCGAAGCCAGCCCAGGCCATATGAAGAACAGCGGCAACGATCTGATTGGCCCGCAAGCACAAAGATGCATCATGAGGTTACAAGCACTAAGATTTCCTAGAGCATTTTAACCGGTGAATGATGTCAAACTACTGACTACTCGTAATGTGTGTCAAACCTCTTAATCCAGGAGGGATGGATGTGGTAGAGTGTTGTGAAAATGAATGTTGTCGTAACTTCACTCAAGCAATGAATGGAAGTCTATTTTTCAAATGACCACTAAGTTCAGGCTGATGTTGGCAAACTGTCAAATTGCCTCACAGTTTTTAGCTTTTCTATAGTTTTGTACTGTCCAGAAACAATCATGTTAATCACTCTTAAGTTgttatgcatgtgtgtagtctcatgcatgcgtgtgtgtatgtggaaaaAGAAGGAAGGCAGAACAGAGGAAGCGAGACCTGATTATGGATTATGatgtttggggggaaaaaaaagcaggctGAATCCGTAGCTTAGTTGGCTGAAAACATCATAGTGTTAAGATCGTGTTTAATTTCACAGAGATGGTTTAAAGTGCGTTCAACAACGATCTTAGTATCTAGGTGTTTCAGGGGAAACTGGCGCAGGTCTGTAGAACATGcagatgtgtctgtgtgtgtgtgtgtgtgtgaatattctGTAGTTTTACACTAGAACAGTTGCTGTTTCCATTTGGAAATTAAAGAGGCAGGGCAGAGCACAGATAAACGAAGGGCTGCTGACTTGGCTGCTCAGTATTTCCTGTAAATGTTTCAGGCAGTATGTTATCTGTggctcaacttttttttttttactgaatatgagattctaaaatgttttcccTGTTACTGAGATAGTTTGTTGATGgcacaaaatatgcaaaaaaaaaaaaagaaatatcatTTTTCTGACTGTTTTGTGCTCAATATGGACTGTAAGTTTTTCCAGAATGGATGTACTGTATAACTGGCCTTAAATTGTGACTGATAATCTGAGAAAAAGCTCTAAATTTGATCGATATCTGACATATTTTAACAGAGAAAAGCACCGACTGGACGCGATTTCAACAACTAATTGTGTGCTCAGTGTGACAAATCCTAATTATGTAAAGAAATTTCTGGGTTCAGGACGTAACTCGATCCTTAATTTTTAATTCGCtggcctgaaaaaaaaaagttcactggTATTTAAATGGTCATTTGACTCAATGACTGAAATGTACTTATTTTATACCACTTGTTCAATAGTGTTTCTCATCAGTAATATGCAGGTATATGCAGTGCAATTCATGGAAATGTATCCTTTccactgttcatttttataagaCATGCCATttgtgaataaatacatttgaataacaa
>XM_034302189.1
ACCAACTGGAGGCCCATCCAAACACCAACAAGCGTTCTGGACCGGAGTGGCAGCTGGTGTGTGATGAGGAGTGGAAGGTCCACATCGCCAAGTTCTCATTGCTGGTGGGCTCCATATTTGGTTACCTGCTGATGGGCGCTATGGCGGACTGGATAGGTCGTATTCCGGTGCTGCTTGTATCGGTGTTGTCTGTGCTCGTGTTTGGCTTGTGTGTGGCCTTCTCTGTGGACATGGCCATGTTTAGTACTCTGCGCTTCTTTCAGGGCTTTTGCCTCGCTGCGATCAGACTCTCCCTCTATGTGCTGAGGATTGAGCTGTGTTTGCCCGGTTGGCGCTTCTCCATGACGATGGTTGCCAGTCTGGTGGTGGTGGGCGGGCAGCTGCTGATGCCGGGTCTGGCAGCTCTGTGCCGTGATTGGCAGATTCTTCAGGTCCTCATCATTGTCCCATTCGTCCTAATGCTTCCTTACATTTGGGTTTTTCCCGAGTCTCTGCGTTGGCTGTTGGCCACGCAGCACTATAACAGAGCAAAGAGGCAAATGTACTCTATCGCCCGAAGTAACAAGGTGGACACTGCAACTGACCCTAATGGAATTCTCTCAGAGCTGGAGCGTGAGCTGCAGCAGAAGCCCAGAACCTCCTGTATCACACAGCTGAGAAGCACACGAAACCTGTGGAAGAGCACTGTAGTGCTCTGCGTCAACTCgctgacTGGCTATGGTATCCACCACTGTTTTGCACGCAGTGTTTTGGAGGGCAGCACCTCTCACCTGCACTATTTTGCTCTGGCAGGCATCGCCATGGCCTCGTGTTTGGTGCTTTGTCCAGTGGTGGCAGCATTCGGCAGACGAGGCGGCCTCCTCACCTTCATGATTATCACAGCGCTGGCCTCCTTACTGCAGCTCGGCCTGCTCAGCTTAATCGGAAAGTACAGTCTTCGGCACAATGCAGTTCTCAGGGACACGCTAAATCAGCGGTTCTCTGTGGCGTTTTCCATCATTGGAATGTTCTCGTCTCACGCCGTCAGCACTCTAAGTATCTTCTACTGCACAGAGATCACGCCTACTGTCATCAGgggtgGAGGTGTAGGTTTGGTCCTGGCTAGCGCAGGGTTCGGCATGCTAACTGCTCCACTTATGGAACTTCACAACCAGAAAGGCTTCTTCCTTCACCATGTCATCCTCACATGCTGCACTCTCCTCTGCATCATTTGCATTCCATTGCTGCCTGAGACCACCGGCCAACCGCTGCCTGAAACTCTGGCTGAAGGGGAGGGGCTTTTGCGCAGGCCCCTCCTCCCTGGAGAGCAGCACCACCTTCTGGCCAGGCAAGAGGTCAGGGAGTACTCTCGTGTTCAGGACACGCCTCTTCATCAGGTTGTCAATCCCAGCAACACCACAGCACCTAGTAACAGCACAGCGAACGGAGTGAGGACTTGACTGTGTGCATGCGCTGCGTGAATCGAAGCCAGCCCAGGCCATATGAAGAACAGCGGCAACGATCTGATTGGCCCGCAAGCACAAAGATGCATCATGAGGTTACAAGCACTAAGATTTCCTAGAGCATTTTAACCGGTGAATGATGTCAAACTACTGACTACTCGTAATGTGTGTCAAACCTCTTAATCCAGGAGGGATGGATGTGGTAGAGTGTTGTGAAAATGAATGTTGTCGTAACTTCACTCAAGCAATGAATGGAAGTCTATTTTTCAAATGACCACTAAGTTCAGGCTGATGTTGGCAAACTGTCAAATTGCCTCACAGTTTTTAGCTTTTCTATAGTTTTGTACTGTCCAGAAACAATCATGTTAATCACTCTTAAGTTgttatgcatgtgtgtagtctcatgcatgcgtgtgtgtatgtggaaaaAGAAGGAAGGCAGAACAGAGGAAGCGAGACCTGATTATGGATTATGatgtttggggggaaaaaaaagcaggctGAATCCGTAGCTTAGTTGGCTGAAAACATCATAGTGTTAAGATCGTGTTTAATTTCACAGAGATGGTTTAAAGTGCGTTCAACAACGATCTTAGTATCTAGGTGTTTCAGGGGAAACTGGCGCAGGTCTGTAGAACATGcagatgtgtctgtgtgtgtgtgtgtgtgtgaatattctGTAGTTTTACACTAGAACAGTTGCTGTTTCCATTTGGAAATTAAAGAGGCAGGGCAGAGCACAGATAAACGAAGGGCTGCTGACTTGGCTGCTCAGTATTTCCTGTAAATGTTTCAGGCAGTATGTTATCTGTggctcaacttttttttttttactgaatatgagattctaaaatgttttcccTGTTACTGAGATAGTTTGTTGATGgcacaaaatatgcaaaaaaaaaaaaagaaatatcatTTTTCTGACTGTTTTGTGCTCAATATGGACTGTAAGTTTTTCCAGAATGGATGTACTGTATAACTGGCCTTAAATTGTGACTGATAATCTGAGAAAAAGCTCTAAATTTGATCGATATCTGACATATTTTAACAGAGAAAAGCACCGACTGGACGCGATTTCAACAACTAATTGTGTGCTCAGTGTGACAAATCCTAATTATGTAAAGAAATTTCTGGGTTCAGGACGTAACTCGATCCTTAATTTTTAATTCGCtggcctgaaaaaaaaaagttcactggTATTTAAATGGTCATTTGACTCAATGACTGAAATGTACTTATTTTATACCACTTGTTCAATAGTGTTTCTCATCAGTAATATGCAGGTATATGCAGTGCAATTCATGGAAATGTATCCTTTccactgttcatttttataagaCATGCCATttgtgaataaatacatttgaataacaa

Function

symbol description
slc22a23 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC22A23 (solute carrier family 22 member 23).

GO: NA

KEGG:

id description
K08215 SLC22A23; MFS transporter, OCT family, solute carrier family 22 (organic anion transporter), member 23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917421.2 True 4227 mRNA 0.50 10 8360811 8379264
XM_034302189.1 False 2822 mRNA 0.46 10 8360567 8379264

Neighbor

gene id symbol gene type direction distance location
phactr1 LOC108260295,LOC108443237 coding upstream 46767 8296810 ~ 8313800 (+)
si:ch211-221n20.8 LOC108261142 coding upstream 65688 8275792 ~ 8294879 (+)
eef1db eef1d,LOC108259081 coding upstream 86319 8263075 ~ 8274248 (+)
pycr3 pycrl coding upstream 99808 8256059 ~ 8260759 (+)
LOC113529048 tsta3,LOC107672947 coding upstream 106208 8235193 ~ 8254359 (+)
irf4l LOC108274592 coding downstream 8872 8388136 ~ 8391262 (+)
fig4a fig4 coding downstream 72106 8451370 ~ 8508697 (+)
LOC113529322 gpr6,LOC107739193,LOC107564602,LOC107667838,LOC101067178 coding downstream 135500 8514764 ~ 8516557 (+)
cdc40 cdc40 coding downstream 226944 8606208 ~ 8627764 (+)
slc22a16 slc22a16,LOC107602826,LOC107726421,LOC107696098,LOC107693213 coding downstream 299336 8678600 ~ 8691704 (+)
G409693 NA non-coding upstream 235148 8104207 ~ 8125419 (+)
LOC113528831 NA non-coding upstream 426061 7926194 ~ 7934506 (+)
G409603 NA non-coding upstream 478179 7882167 ~ 7882388 (+)
G409602 NA non-coding upstream 481466 7878890 ~ 7879101 (+)
G409390 NA non-coding upstream 829271 7530925 ~ 7531296 (+)
G409896 NA non-coding downstream 12237 8391501 ~ 8394942 (+)
G409899 NA non-coding downstream 30443 8409707 ~ 8412059 (+)
G409997 NA non-coding downstream 148357 8527621 ~ 8529048 (+)
G410061 ust non-coding downstream 322686 8701950 ~ 8702384 (+)
G410065 NA non-coding downstream 338658 8717922 ~ 8718940 (+)
G409600 NA other upstream 482022 7877795 ~ 7878545 (+)
LOC117596594 NA other upstream 1289534 6764911 ~ 7071033 (+)
LOC117596573 LOC108280157 other upstream 1621040 6613273 ~ 6739527 (+)
LOC117596581 NA other upstream 1706549 6633365 ~ 6654018 (+)
G408929 NA other upstream 1718069 6556363 ~ 6642498 (+)
LOC113529148 NA other downstream 719113 9098377 ~ 9104224 (+)
G410936 snx3 other downstream 1798785 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 1818452 10197716 ~ 10230807 (+)
armc2 armc2 other downstream 1856717 10235981 ~ 10295205 (+)
G411297 NA other downstream 2384950 10764214 ~ 10764729 (+)

Expression


Co-expression Network