G409896


Basic Information

Item Value
gene id G409896
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 8391501 ~ 8394942 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU486582
TCTAACACCTGCCACGTTGTGCACTGTACATGCATGCAGAGATATTCCAGCAAGGTCATGTAGTGACCTATTATGTAGTATTTGCTATAAATACTTCCATCATACATTAATCATTCCCTACAACCTTCTTGCTGAGATGGTTGACAAGGAACCCTGGTGGTTATCCAGGGCACGACCGAACCACAGTTATATACGTAACTGTGTGTGTAGGGTTGGGGAGGGAGGTGCGGGTGGAGGGTGGTATTGGGGTTTGTAGCATCTGGGTAATGTACCAGCAATGTCATGAGGAACATGACTCACCTTAAGACAACCCAGAGAACCAGGCAAGGGCAAGGAGACATCAGCAAGAGGGACCTTATGCATGGTAACAGGAGAATAGACTCATGGAATGGAACCTCTACATAAGGCATGTGAGTAGGAGATGCTCCTGGTAGAGTTGCTTGTCACAGTAGGCCCTGGGTGTTCAGCCTGTCTGTAGCCTAGGGTACTAACCTACACCACCTTGGTCCTAACAGTACGATGCGGTCCAAATGACACTGTAGGTCACGTACCACGCACAGCAAAGAAATGTTTTGCAGGCTCACCCTCTATCGACTGCaaggtgtgtttatttaaactgttttacaAATGTGAGCAGGGGCAGAAATCTTGGATTCAGCAAGATGATTTGAGGTGAACTTATCATGAGCTTTTAGCTGTAGTAGCTGCTAGAAAGAACAGCCACCTATCAACTTTACACTTTGGCTCATAATGAGAAGCTTAAATGGACTCCAGCAGTGGGGGAAGTCCCATACCTGGCTCCAGAGGGACCATGAAAAGTAGAAAGGCAGGATTAAGTCTATGGGACCCATCCACACTGTGGTGTGCTGCAATGGCTGCTGCATACACCTTTACAGTAGATAAAGGGGACTTGCCGCTGTTTAGCAGCCACCAAAAGGTCAAAATTCTAGTAACTGGACAAAGCACCGATCCAGGTGGTAAGTTGAACACCATTTGAACTGTCTGTCTGAGATAGCAGATCTACTGGGAGGAGGAAGCTGTCAGGGTGCACTAACAACTGTTGAAAGCAGCATTGTGACCCTGGGGCCAGAAGTTGGACTCTGTAGCCTAGTTGCTGAATCCTCCACAGAGTAGAGTTGAGAAAATGAGTGCTGGAGGATATAATTGGTGAGGCCAGGGTATCCAGTGCGAGTGGGCTGTTCGCTTCTGCCAGAGAGAACAACAAATGGCATTGACCACAAAGAGCTGTGAATTAGTAGGAATCCAGCTAAATTAACAGGTTCAGCAATCAACAGTGCATGGCAAGTTGAGGAGAAACGGTCTACTTTGCTAGCAATGTGTTAGTCACAAGCTCTGTTGCCCAGAGCTAGCTGCTGGGAAATGTGGAGTATTTGAAGGAGAAAATGCCTAGGAGGTAACagtcatgggggaaaaaaaaaaaaaaggttcgtCACACTCACCATACGGTGAATAGAAATTGGCCTAAGTGAAACAACCACGTGACTTGCGGCCTATGGCTGGTACAGACCCAGGAAGTGTTGTATGAATAATGCTTGTAATATGGAAGAAAAGCACATTTACCATGGTGGTAAGAAATAAGAGGAAGCGAATCCCGGCTTTGGAGGAAAGAACACCTGCAGCTCTGACACATGTTGCTACACAAAAAGCTCCATACTGTGTTCATGTACTCCGTCATGTGCACAGCCGAGATGGAAGAAGACAACGAAGGCAGTTATAGTGAGTACTGCATCATACAGCCCTAAGCGACCTTGTTGGAAGATCTCGGGATATGAGTGCACACGCACAGGGTTGTGCGACACACTGCCCTTGGCAAttaggaggggtgaaatagaacCGGACATGTTTTGGATTCAAGGAACAAACACTTTGGAACATTTaaagtgaaatgtatttttgtggacatatttatttcccttttacatttgacatttaaaCATGGCGAGCTGTTTAAATATTAGCAGGAATTTAGTGCACATAATGCtgtactgaactgaactgaccaatcacaatcacatCGAGGAAACGAAGCTTAATTAAAAGTGGACTAAGCACACCAATACATGTATCTGGTGTTAGTTTAGGTAAGCATGAAAAGGGATTCCTGACTGTAGTGATAAACATCATCCAACCATCAACCATGTGACAAAGACACCACATCTTCAAATTAATTTCAGAGTAAAAGTCTGTCGGTTTTAAACTTTGTTTCCTTTACAACCTGTCAAAACCAAGAGACAACCTTTACAACACAATTATCTTCCCTTTCCGAAGTTTGTACAATAAACAGGAGTTAGTAACATTCATACACTTAATAGTGCTTCATTACATTAATGTCCCATAATTCACAGCTTTTGTTTTGAACAAACTGTAGAGCATGAGAGACCAGTTGAGATAAATAAATTCAGTGGGAATGCCAACAAAGGTTCAAATGCCAACAAATCATTAATGAAAGCATGCAGGGACCTGTTGGTATGACTGGTATACTGCCACTACTTGTTTGTACTCATGATGCTACTATACATCACTGAAGTATTGACTGGCACTGTCATTAGTATTAGACCCCATTGTGAGTAATATTGGTGTGTATTAGTGGGAGACCTGTAACACTACCACAGTGGAACAGTCAACAATTTTATCGGTGGCAAACTTGTAATACTGACATTACTTCCATCATGTGCCCCTTCCAGCTTAGTGTTGACCAAACAAGGTCCTtataatataaatcatatgAACACACAAAACTGAAGTGAACAGAATCCTCACAtacaggaaatatatatatatatctttcaaTTAAAAAGACAtgatttcaaatattaaaaacacacaaacaatataaaacaaatgtaCATGGAAAGgcataaataaaaagctttggTCAAGACAATAGTTCTCTTTTATCAAATGGAATGTGTTTCACGTGAATGGCATCCATATCAGCCACGCCACTCGACCATTTAGTGAACCAAAGATTCACCAAAACCCCTAATCACTACAAACAGATCTCATCTTCCTTTTGTAAACATCATCATAGTCCCTGTTCAACAAATCCACAGACGTTTGGAGAGAATCTGAAATATAAAACTTCAGCTCATTGCAAGGTACTGTAGCATGATCAATATGGCTAAGGCTCTGCAGTCACAGCCTATAAGGGTTATATTTATGCAGAGCTTGTATATACTATTGCATGCTGGGATAGGTGTGCAATATTAAGGCAGTCTAAGTGAGGCACAAACAGAAGCCTGCTTCTCTCTTACCCTTCATCCTAATCTAAATGAGCTCAACACACAACCTGGTAAACTTGTACAGTTTGGTCTCGTGTCAAAACTAGTGTCCTTGAAACCTTTTTGGAGGAGTGTATCTCCACATATCCAGCAGTAGACCTTGTCTCCAGCATTCCAGCATTTTAAATTACTTGCCATta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU486582 True 3442 lncRNA 0.42 1 8391501 8394942

Neighbor

gene id symbol gene type direction distance location
irf4l LOC108274592 coding upstream 239 8388136 ~ 8391262 (+)
LOC113528738 slc22a23,LOC107739176,LOC100334012,LOC107661357,LOC107557020,LOC107671089,LOC107572585 coding upstream 12237 8360567 ~ 8379264 (+)
phactr1 LOC108260295,LOC108443237 coding upstream 77701 8296810 ~ 8313800 (+)
si:ch211-221n20.8 LOC108261142 coding upstream 96622 8275792 ~ 8294879 (+)
eef1db eef1d,LOC108259081 coding upstream 117253 8263075 ~ 8274248 (+)
fig4a fig4 coding downstream 56428 8451370 ~ 8508697 (+)
LOC113529322 gpr6,LOC107739193,LOC107564602,LOC107667838,LOC101067178 coding downstream 119822 8514764 ~ 8516557 (+)
cdc40 cdc40 coding downstream 211266 8606208 ~ 8627764 (+)
slc22a16 slc22a16,LOC107602826,LOC107726421,LOC107696098,LOC107693213 coding downstream 283658 8678600 ~ 8691704 (+)
LOC113528867 LOC108439581,LOC108256302 coding downstream 992888 9387830 ~ 9442474 (+)
G409693 NA non-coding upstream 266082 8104207 ~ 8125419 (+)
LOC113528831 NA non-coding upstream 456995 7926194 ~ 7934506 (+)
G409603 NA non-coding upstream 509113 7882167 ~ 7882388 (+)
G409602 NA non-coding upstream 512400 7878890 ~ 7879101 (+)
G409390 NA non-coding upstream 860205 7530925 ~ 7531296 (+)
G409899 NA non-coding downstream 14765 8409707 ~ 8412059 (+)
G409997 NA non-coding downstream 132679 8527621 ~ 8529048 (+)
G410061 ust non-coding downstream 307008 8701950 ~ 8702384 (+)
G410065 NA non-coding downstream 322980 8717922 ~ 8718940 (+)
G410070 NA non-coding downstream 326999 8721941 ~ 8722158 (+)
G409600 NA other upstream 512956 7877795 ~ 7878545 (+)
LOC117596594 NA other upstream 1320468 6764911 ~ 7071033 (+)
LOC117596573 LOC108280157 other upstream 1651974 6613273 ~ 6739527 (+)
LOC117596581 NA other upstream 1737483 6633365 ~ 6654018 (+)
G408929 NA other upstream 1749003 6556363 ~ 6642498 (+)
LOC113529148 NA other downstream 703435 9098377 ~ 9104224 (+)
G410936 snx3 other downstream 1783107 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 1802774 10197716 ~ 10230807 (+)
armc2 armc2 other downstream 1841039 10235981 ~ 10295205 (+)
G411297 NA other downstream 2369272 10764214 ~ 10764729 (+)

Expression


Co-expression Network