RNA id: TU486702


Basic Information

Item Value
RNA id TU486702
length 1322
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G409997
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 8527621 ~ 8529048 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtttgtttgtttgtttcttcttcttttattttcctgtCTGGAACATAGAAACAGCTAATGTTTAGAAATGCAGGCAAAAAGTAGTAACGGCACAATACATTCATCAACTTAACAACACGTCTATACAAACCATAAGGCAGGAGAAGGAGAAATGTATGGCCAGGTCTTTTCTGTCAAAAGACAGTCAGTTGATACTGTAGTGGTCTGACTCCTTATTGATTTAAACACACCATGTAGAGCCCTCTGAATGCTAGAACCTGATAAAACATAACATCTTGCCTTAATCTCTCGGCACCATTTAAACCccttatattgttttttttgtttggtttttttttttacgaattttcacatctttacagaaaacgAGCATCGTAaccacattttttctttcttattaaaaTCATACAATGACAGTACATATTGCTCAGAGATATGTAAAATTATTGTAAtgagatcattttttttaatggaccaTGCCCTCATTTCACATAGGCATTTACTGGCctatttaaaatgtgaaatgtctTCCTTATACacgtaaaataaaatgaagttaaaaaaataataaaccagatGGTGGCAGCATTGCCTTAGAATTTAATAAGATGCTAAAGACGCATCGCCCCTTTACATAACACTAAACAGCGGATCTTTGTGGTCCCTCCTTGAAATGAGCTACAACATCTGAGTTACTTCTATTAATTGTAAAATAGAAGTGTTAAAAAACCTTGAGAACATCAACATAAGTTGAATTATGTTGTATAAAAAACATGAGAGCAAACATCCTGAAAAAGACAACTGGAGACACAAAGTTTCCTGAAACATACCACATGGAGAACCGTGGAagcaggacagagagaaaacggacacaattttttttcttaaaatggtAATTTCTTAATCATTCCCTCCTAAATATTCAGCTTGTCTCtcccttcttcttttctctcactcCATCCAGTCAACCTCATCAAACTCAGAGTCATCTTCTGAGTCGCTGTACTCCACAGCAATGCGTCGGGACAAGATAGTGGCTACGTCATTGCCCACACGCTCATGCTTAGCCTCCTGTTCCCTTTGCTCCTCAACCTTCCTCAGCTGGATacctgagagaaaaacaaatcactCTAGATTTGCTCAAAGGGACTAATCTATTTATTAAGCATTCTTACAAGTTCTACACAATTTATAAATATGCCCATAACAGACTAAATGGTCTCTTGCATATTCCCTAAACAGACTAAACAAGCTACTgagaatatgcaaaaataataaacaatctACTAAATATGCCCAAAAAGACTAAACAGCCTACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486585 lncRNA upstream 115668 8409707 ~ 8412059 (+) True G409899
TU486582 lncRNA upstream 132785 8391501 ~ 8394942 (+) True G409896
TU486342 lncRNA upstream 402308 8104207 ~ 8125419 (+) True G409693
XR_003402999.2 lncRNA upstream 593221 7926194 ~ 7934506 (+) True LOC113528831
TU486243 lncRNA upstream 645339 7882167 ~ 7882388 (+) True G409603
TU486777 lncRNA downstream 172902 8701950 ~ 8702384 (+) True G410061
TU486781 lncRNA downstream 188874 8717922 ~ 8718940 (+) True G410065
TU486786 lncRNA downstream 192893 8721941 ~ 8722158 (+) True G410070
TU486788 lncRNA downstream 193787 8722835 ~ 8723194 (+) True G410072
TU486790 lncRNA downstream 195093 8724141 ~ 8724345 (+) True G410074
XM_026918442.2 mRNA upstream 11170 8514764 ~ 8516557 (+) True LOC113529322
XM_034302043.1 mRNA upstream 19030 8451370 ~ 8508697 (+) True fig4a
XM_026918575.2 mRNA downstream 77160 8606208 ~ 8627764 (+) True cdc40
XM_026917797.2 mRNA downstream 149552 8678600 ~ 8691704 (+) True slc22a16
XM_026918139.2 mRNA downstream 569329 9098377 ~ 9104224 (+) False LOC113529148
XM_026918140.2 mRNA downstream 571886 9100934 ~ 9104224 (+) True LOC113529148
XM_034302088.1 mRNA downstream 858782 9387830 ~ 9442474 (+) False LOC113528867
TU486240 other upstream 649182 7877795 ~ 7878545 (+) True G409600
TU485391 other upstream 1675773 6849506 ~ 6851954 (+) False LOC117596594
TU485379 other upstream 1732507 6483101 ~ 6795220 (+) True G408893
TU485443 other upstream 1963951 6556363 ~ 6563776 (+) True G408929
XR_004577658.1 other upstream 2251062 6272032 ~ 6276665 (+) True LOC117596600
TU487747 other downstream 1649001 10178049 ~ 10182672 (+) True G410936
TU488185 other downstream 2235166 10764214 ~ 10764729 (+) True G411297
XR_004577598.1 other downstream 2586575 11115623 ~ 11147509 (+) False aig1
XR_004577599.1 other downstream 2586576 11115624 ~ 11145680 (+) False aig1
XR_004577621.1 other downstream 2861452 11390500 ~ 11418204 (+) False txlnba

Expression Profile