RNA id: XM_026918575.2


Basic Information

Item Value
RNA id XM_026918575.2
length 2183
RNA type mRNA
GC content 0.47
exon number 15
gene id cdc40
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 8606208 ~ 8627764 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACCCTTAGACAACAACATCGAAGATGGCGGCTCTGGTCGGTTCCCTCGTTGCGTACGGCAgtgattcagattcagaaaaTGAGCCCGAGTCCAATACAAATACAGAACAAGCTGATCCAGATGCAGTGGCACATCTCCAGCCTTTGAAATCTGGAAAAACTACAAGTTTGGTTCTTAATTCGGCGCCTGAGGTCGCTGTAAAGGAAGATGTTGAGACAGGAACGCATCTGGATCCCTCCCTCAAGGAGATCAGCTACAATCCTACCTACGACACCATGTTTGCACCTGAGtttggacCTGTTAATCCGTTTAAAACTCAACAAATGGCCGCACCGAGGAACATGCTCTCGGGATACGCTGAGCCTGCCCATGTCAACGACTTCATGTTTGAACAGCAACGGAGGACGTTTTCTACTTTCGGCTATGCCTTGGACCCCTCCATGGACAACAATCAGGTTTCTTCAGCCACTTATATAGGAGCAGTGGATGAGGCAGAGAAACACAAAGgGCAAACAGTGTTCGAGACGGGCCCAAGAAAAatggagaagaggaagaaagtgaaAGGAGGAGATGCATCGGAGATCGATGGCTTCCTGGGACCTTGGGCTAAATATCAGGATGAAAAAGATGTTGCTAAACCCACAGAGgaggagcagaaggagtTAGATGAAATCACAGCAAAGAGGCAGAAGAAAGGCAAAAATGAGGAAGAGGCTCCTGCAGAGGAGAAGACCATTCTACACGTCAAAGATGCGTACGATTACCAGGGCCGTTCTTACCTGCACGTTCCACAGGATGTGGGTATCAACCTGCGCTCAGCCAACATACCTGAGAAATGCTATCTGCCCAAAAAGCAACTGCACGTCTGGACCGGACACACAAAGGGTGTCAGTGCTATTCGGCTGTTTCCTGTGTCTGGCCACCTGCTGCTCTCCTGCTCTATGGACTGTAAGATTAAGTTATGGGAGGTGTACAATGACCGGAGATGTTTACGGACATTTATTGGTCACAGTAAAGCGGTGCGTGATATCTGTTTCAACAACACCGGTACTCAGTTTCTCAGTGCTGCATATGATCGCTATCTCAAACTGTGGGACACGGAGACcgGTCAATGCATCTCAAGGTTCACTAACAGAAAAGTGCCCTACTGCGTGAAGTTCAACCCAGATGAAGACAAGCAAAACCTGTTCGTAGCCGGCATGTCGGACAAGAAGATTGTgcagTGGGACATTCGCTCAGGGGAGGTGGTTCAGGAATATGATCGTCACCTGGGAGCCGTCAACACGATCACGTTTGTGGACGAGAATCGCCGCTTCGTCAGTACGTCCGATGATAAGAGTCTGCGTGTGTGGGAATGGGATATTCCTGTGGATTTCAAATATATTGCAGAGCCCAGTATGCATTCAATGCCTGCAGTGACACTGTCCCCCAACGGGAAGTGGCTGGCTTGTCAGTCCATGGATAATCAGATCCTAATCTTTGGAGCTCAGAACCGATTCAGGCTGAACAAGAAGAAGGTCTTCAAGGGTCACATGGTGGCTGGATATGCTTGTCAGGTGGACTTCTCTCCAGATATGAGtTATGTGGTGTCTGGTGATGCGGATGGGAAGCTGAATGTCTGGGACTGGAAGACCACCAAACTGTACCACCGAATTAAAGCACATGACAAAGTGTGTATCAGCGCCATCTGGCATCCACACGAGACCTCCAAGGTCATCACCTGCGGCTGGGATGGACAGATCAAACTCTGGGACTAAGATGAAGAAGACAATGGGCGAGATGATGGAAGAAGTAGTCGGAAAACTAAATCTAAATTTTTTGCCATCTTGTCAGTTTTTTGCTCAGCTGATGTGATCTTCATTGCGTCTGTCTCGTGCTAAGGTTTATGGTAATTCCGCATTATGGTATTGGCTTTGCTCTGAGTTTTGTATAAATTTTATGGACTGGTATCCAGCCCTGATTTCtagtttgtttggtttttatcTTTCCCTCCCATTTCAGAGACTCTGGGCACTTGCAATGGCTggggagatttttattttgttgttattcATTTTAGTGTTACTGCCATGTACTGCTAAAGCCATGATTGGTAACACTTATACATAATGTCAGCTTTTCAATTCAGTCACCCAGTGTCTCTTTCtgaacataataaaacattttgtacttttttccatCA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process

KEGG:

id description
K12816 CDC40, PRP17; pre-mRNA-processing factor 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486702 lncRNA upstream 77160 8527727 ~ 8529048 (+) True G409997
TU486700 lncRNA upstream 77374 8527621 ~ 8528834 (+) False G409997
TU486701 lncRNA upstream 77374 8527727 ~ 8528834 (+) False G409997
TU486585 lncRNA upstream 194149 8409707 ~ 8412059 (+) True G409899
TU486582 lncRNA upstream 211266 8391501 ~ 8394942 (+) True G409896
TU486777 lncRNA downstream 74186 8701950 ~ 8702384 (+) True G410061
TU486781 lncRNA downstream 90158 8717922 ~ 8718940 (+) True G410065
TU486786 lncRNA downstream 94177 8721941 ~ 8722158 (+) True G410070
TU486788 lncRNA downstream 95071 8722835 ~ 8723194 (+) True G410072
TU486790 lncRNA downstream 96377 8724141 ~ 8724345 (+) True G410074
XM_026918442.2 mRNA upstream 89651 8514764 ~ 8516557 (+) True LOC113529322
XM_034302043.1 mRNA upstream 97511 8451370 ~ 8508697 (+) True fig4a
XM_034302044.1 mRNA upstream 97511 8451370 ~ 8508697 (+) False fig4a
XM_026917333.2 mRNA upstream 97511 8457789 ~ 8508697 (+) False fig4a
XM_026917334.2 mRNA upstream 97511 8457789 ~ 8508697 (+) False fig4a
XM_026917797.2 mRNA downstream 50836 8678600 ~ 8691704 (+) True slc22a16
XM_026918139.2 mRNA downstream 470613 9098377 ~ 9104224 (+) False LOC113529148
XM_026918140.2 mRNA downstream 473170 9100934 ~ 9104224 (+) True LOC113529148
XM_034302088.1 mRNA downstream 760066 9387830 ~ 9442474 (+) False LOC113528867
XM_026917642.2 mRNA downstream 760066 9387830 ~ 9442474 (+) True LOC113528867
TU486240 other upstream 727663 7877795 ~ 7878545 (+) True G409600
TU485391 other upstream 1754254 6849506 ~ 6851954 (+) False LOC117596594
TU485379 other upstream 1810988 6483101 ~ 6795220 (+) True G408893
TU485443 other upstream 2042432 6556363 ~ 6563776 (+) True G408929
XR_004577658.1 other upstream 2329543 6272032 ~ 6276665 (+) True LOC117596600
TU487747 other downstream 1550285 10178049 ~ 10182672 (+) True G410936
TU488185 other downstream 2136450 10764214 ~ 10764729 (+) True G411297
XR_004577598.1 other downstream 2487859 11115623 ~ 11147509 (+) False aig1
XR_004577599.1 other downstream 2487860 11115624 ~ 11145680 (+) False aig1
XR_004577621.1 other downstream 2762736 11390500 ~ 11418204 (+) False txlnba

Expression Profile