RNA id: XM_026918139.2


Basic Information

Item Value
RNA id XM_026918139.2
length 2658
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC113529148
representative False

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 9098377 ~ 9104224 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAACCATTCATTGTTCGGTATCAGTGGTTCCGGACCCATTTTATTGTTGCAGTCTGGGAGTGGGCGTTTCTAACGCTACTGATACCAACACGGTACAAGTAGTGTCCTGTCCTCTCCTGTTGTCCATTCACTAGGATGGAACCCACAGATCTGGAACTCACCTACAGCCAGCAAAGCTCATCTGGCACTTCCCACAGAAACACATTACGAAGacaagtaaagaaagaaattcacCACTGCTCACTATGTGGGATGAATTTCAGCCGGAAGGGTAATCTCCACCAACATcagcaaattcacacaggagagaagccatatcacTGCTCCGACTGCGGGATGAGTTTCAGTCAGAATAATACTCTACAACGACACcggcgcattcacacaggagagaagccatattTCTGCCCAGACTGTGGGATGAGTTTCAGTCAGAAGAGTAATCTCCAACAACACCAGCGTATTCACACAGAAGAGAAGCCATACCTCTGCTCAGACTGTGGGATGAGTTTCAGTCAGAAGAGTAATCTCCaacaacaccagcgcattcacacaggagagaagccatatcaGTGCACAGACTGTGGGATGAGTTTTAGTCAGAAGAGAGCTCTCCAACAACAccagcacattcacacaggagacaAGCCATATCACTGCTCAGACTGTGGGACGAGTTTCAGTTGGAAGAGTAATCTCCAacgacaccagcgcattcacacaggagtgAAGCCATATTACTGCTCAGAGTGCGGGATGAGTTTCAGTCATAAGAGCACTCTCCAACAGCAccagcacattcacacaggagtgaagccgtatcactgctcagacTGTGGGATGAGTTTCAGTTGGAAGAATAATCTCCAtcgacaccagcgcattcacacaggagtaAAGCCGTAATTCTGCTCAGTGTACTGGAAGAGTTTTAGTAGACACAGGAGTTTTTACACAAAAGCACATTTACACAGCTAAGAATGAGGACATGCTGcagttataattatattaaattatatttgctTAAACTTAAATTGGCACTTTTATCTATAtttatccattatttaaaaaaaatccttgtctTGTTGTTTCCTTTTCATACTGTACTTACCTCCCCAACTGAGTTTTTAGTCCTGACAACTAGTCACTAGACTTAGCATGAAGAGGCATTTtggatagagactacaaagcactttttttttttttatttttttttttaagtccgTCTGGATAAGGGAATCTGCGAAATGCTGTATATGTGAATGCAGCTATCATGAGAAATTGgctgctttattattatttttatttaattactgaaTTGGAATAGGTTATTAAAAGATTTGGTTTGAAGCAGTTATTTGTGAGTAAGCAAGTTactcacatttttgcattttttcaggCATTGCATAGTTATAGGCTTACCCAAGGAAGGTTTTTCCCATGACACAAACAGCCCATGACACAAACAGCTGAATCCTTCCATTCTATCCATGTGGATGCATGACATGTGCACCAGACACAGTTTAATTATATAACATAACTCCAGTACCCTCTGGTGCAAATCAAGTGCAGGTTGGGTGCATCGAGAGCATGTCACTAACTCACTTTGCAGAGGCTGTTGCCAATAAGAGTGATGACTTAATTGACAGTGTTCAGAGTGGTTTGAGCATAGGACATAACAGAGCATCCAGTGGTCCTGTGAGTGAACCAGAGAGGGTTGGAGACAGGACTGAGACAACATGGTTCCTTCATGCAGCGCCATATTAGGTCAAGATAACTCTTAGATAAAGTCTATTTTTGATCCAATCAAAAAGAAGGATTCAGAACACTGAAGTCAAGATTTTCTTTGGTACAGAGTGCATCACTAGGATATTATATcagttattttagtttttatgatAATGTAgttgcaatatacagtatattaattgAGTGACTTCACTATACCCTGCATGAAACATTGTGAGTGTAACATGGATGGCAAATTTTGAAATTTTCCCCTATTACAATGCATTTTGGCACATTATCCAATTATTGCAAAAGAACACAATGGGCCAATTCATTTCAACTACTTTTTTTAGGTGTAAAGAAATTTTTTGAATGAGTTGCTGAGCACCAACCTATTTTCTATTTCAGTggagtgtgtaacagtagtgaGGGGGTCAACAACCTTTAACAACAATGTTCGTGTCTCCCAACAGTGCAAAGTTGATGGTGAGCACTGCTGATGGATCAGGAATCAATCTCTCACCTATCAAATACTTCTGCATTGATGCAAATTTTGTTATCATCATGATGACTGTGATTCCACTCCTATAAAATGGAGGGTGGTTTTTGCTTCTGCTCAAACATATCCAAGTTATGAGCGTAACTGACCTGGACATGAACATCATAGATTGTCGAAACTGCTTCTGATCTGTCATGTTGATTATCGTAGGAGATCTATAAGTATTATCACGTGATACACAtcatgtgtgaatgtgagatcCGGTGGGAAATTCGAAGCTTGGGAATAAGGCTGCAGCTGTTTCAAGTGCAACATACCCAAAACAGGACACGATAAAATATCCAAACTTAAAATGTTGATTTTATCTATAATCTTAAGTTCTGGtaattttcttctgttttttaaatgcCATAAACTGTGCTTGACTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486873 lncRNA upstream 231106 8866745 ~ 8867271 (+) True G410145
TU486800 lncRNA upstream 361532 8736636 ~ 8736845 (+) True G410084
TU486791 lncRNA upstream 373153 8724701 ~ 8725224 (+) True G410075
TU486790 lncRNA upstream 374032 8724141 ~ 8724345 (+) True G410074
TU486788 lncRNA upstream 375183 8722835 ~ 8723194 (+) True G410072
TU486979 lncRNA downstream 726 9104950 ~ 9105151 (+) True G410244
TU486985 lncRNA downstream 4099 9108323 ~ 9108536 (+) True G410250
TU487209 lncRNA downstream 11921 9116145 ~ 9117007 (+) True G410456
TU487218 lncRNA downstream 107327 9211551 ~ 9243793 (+) True G410465
XR_003403001.2 lncRNA downstream 172812 9277036 ~ 9284471 (+) True LOC113528860
XM_026917797.2 mRNA upstream 406673 8678600 ~ 8691704 (+) True slc22a16
XM_026918575.2 mRNA upstream 470613 8606208 ~ 8627764 (+) True cdc40
XM_026918442.2 mRNA upstream 581820 8514764 ~ 8516557 (+) True LOC113529322
XM_034302044.1 mRNA upstream 589680 8451370 ~ 8508697 (+) False fig4a
XM_034302088.1 mRNA downstream 283606 9387830 ~ 9442474 (+) False LOC113528867
XM_026917642.2 mRNA downstream 283606 9387830 ~ 9442474 (+) True LOC113528867
XM_026917644.2 mRNA downstream 283607 9387831 ~ 9442474 (+) False LOC113528867
XM_026917645.2 mRNA downstream 283607 9387831 ~ 9442474 (+) False LOC113528867
XM_026917555.2 mRNA downstream 366450 9470674 ~ 9475067 (+) True erh
TU486240 other upstream 1219832 7877795 ~ 7878545 (+) True G409600
TU485391 other upstream 2246423 6849506 ~ 6851954 (+) False LOC117596594
TU485379 other upstream 2303157 6483101 ~ 6795220 (+) True G408893
TU485443 other upstream 2534601 6556363 ~ 6563776 (+) True G408929
XR_004577658.1 other upstream 2821712 6272032 ~ 6276665 (+) True LOC117596600
TU487747 other downstream 1073825 10178049 ~ 10182672 (+) True G410936
TU488185 other downstream 1659990 10764214 ~ 10764729 (+) True G411297
XR_004577598.1 other downstream 2011399 11115623 ~ 11147509 (+) False aig1
XR_004577599.1 other downstream 2011400 11115624 ~ 11145680 (+) False aig1
XR_004577621.1 other downstream 2286276 11390500 ~ 11418204 (+) False txlnba

Expression Profile