LOC113529170


Basic Information

Item Value
gene id LOC113529170
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 8172515 ~ 8186738 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918180.2
CCCGGTGATTAGGGGACAATGGAATAACGGAATGCTAACGCTGTAGCGGTGTTTTCAGAAAGACACTCAGAGTGTCACAAACTCGCAAACTTTTAACTCACCTATTGCAAAACTCAGCgatttttttgtgttatatagACTGCTTACCAATGACTGAAGAATATAAACTGGAACCTCACCACATTTTCGGTTTGCGCCAGGAAGTGAGAAACAACTTGCTCTTCTTGGACGACCAAACCATCATCTTCCCGAGTGGAAATCACTGTGTGCGCTACCACATCCTTCAGCGATGGAACAAATTCATTCCAGTTGCAAAAGGAAGCAAAGGCATCAAGGCGCTGGCTATAAGCCCCAACCGGCGCTACCTGGCTGTGTCGGAGCGCAGAGAACGGGGCACAATCACCATCTATGATCTTCAGAACCGGCAGTGCCGCAAGAGACGGGTTCTGACAGGTGGTGTGATCAGCGTGCAGGAGTTCGTCTGCATGGCTTTTTCTTCCGACTCCAAGTACCTGCTGGGCCAGTCCGGAGGACCCGAATGGACCCTCTTCTACTGGGAATGGGAGAAGAATGAGGTCATTGCGACGGAAAAGACCACGAGGATCGACCTTGTCAGTCAGGTCAGCTTTAACCCCAAGGACAACACACAGATCTGTGTGACCGGAAAAGGAGTCTTCAAGATCTTCAAACTGGAGAATGAAACCCTGAATCGGACCAACTTGTTTAAAATGGACGTAGAGAACATCCTGTGCCACGTATGGATGTCCGAGGACTGCATCGTCGCAGGGACAGAAACGGGAAAACTGCTACTGCTGACGCTGAAGTCCGGAGACATGCACAAGCTGGGGATGCCGTGTGAGAGGCAAACGGAGGAAAGGGACTCGGACGTGATCACTTCATCTCTGACCGAACTGCCACGTGTCACTGCCATCACGCGGTACTCTACAGGCTTTGCCTGTTCCGCCGGACCGGGTCTAATTTGCCTCTATGAGAAAACGAAGGAGAAGGACAGCTACAGGAAGACCGCAGAAATAAGAATTCCTCAGGACTCGTTCCGTCAGCCGAGTCAGGCCGAGCGGCAGGAGATAACCTCCGTGTGCATGAGTCCATCAGAGGAGACGCTGGCCATCAGCACAGACCAGGGCCAAATCTACCACATCAACCTCGCCTTATCTGAGATTAGCAAGAGTAAGCAGACCAACTTCGAGTTCCTGTTTCACTCTCTTCACTCGGGGAGCATCACCGGTCTGTCAGTCTGCTTATCCAAACCCCTCATCGCCACCTGCTCGAAGGACAGCTCCATGCGCATCTGGAACTACAAGACCAAtTCTCTGGAGCTGTATAAGGAGTTCCCCGAAGAGCCGTACTGCGTGTCATTGCACCCGAATGGCCTTTCCATCCTGGTCGGCTTCTTCAGTAAACTCTGCCTCATGAACCTGTTAGTGGACACATTCCGCACTGTCCAGGAGTTCGCCATAGGCACCTGCAACGAGtgtgtgttcaACCATGATGGCAACATGTTCGCCGCCGTCAGCAGCAACGTGATTCACATCTACAacatcagaacacacaaaaaagtggaCCTTAGGGGCCACCTTAAGAAGGTGCTGTCGGTGAAGTGGAGCGAAGATGACCGTCGCCTGGTGTCGTGTGGGATGGACGGCGCCGTATACGTGTGGAACGTTCTGACAAGCGCCCGCGAGTCTGACAACGTACAGAGATCCTGTATCTACACAGATGTGACGTTCTCACCCAACACTGGGACCATCCTTGCTGTAGGCAGTGATTTCAAACTGAAGGAGTTCCGAGATGAACAGatcCTAAGGGAACTGGTCTCAGATGGCGTTGCCTACACAGCCATCTCCATGACTCGTTCCGGCCAAGCGGTCTTCGTTGGAACCTCTGCTGGAACTGTCAGGGTCATGGAGTACCCATTACAAAAGGGGAAACTCTGGACGGAGTATCAGGCCCATTCTGGTCCCATCACCAAAATGGTCATCACTCCCGGTGATCATTATCTGCTGACTGCCTCAGAGGACGGTTCCCTCCTCATCTGGACAATCACTGACCATCTGGGATGCAAGTTGTGTATGGGAAAAGAAATAGAATACACTGAGGAGGTCCTGTGTGCCAAGACCTATCTGGAGAAAAAGGACCAGATTTTACAAGAGGCTAACAACCAGGTGACGTGGCTGAAGATGGAGCAGGAGAACAAGCTGAATCAGAAGGAAATGAACTACAATAAGAAGATTGATGACCTCATGCAGAATTACCTGCAGCAGATTGAGGCTCTGAAAGGCCAAAACCAGGTGCTGATTACTGAGGACGAGGGCCTGAAGGTTTTTCACCACAAGATGCTGGCCgagataataaaaaaacatgccaaaGAGCTGGAGGATGAAAAACGGGGTCACGTAGAAACGCTTATAGTGGAATATGAAAAGCACTATGAGCTGGAGCAGAGAATGAAGGCCATGCAGAAGGACTGTGAAGAGAAACTTCACCAGCAAGAGGAAAGCCATCTCCATGCCATGGAGGAGATGAAACAGTCCTATGAGGCCAAGCTGCAGGAGAAACAGGCCAAAGTCCAGCAGGACAAGAAGAAGTCTGAGGAGACTCAGAGGAAGAGAATGAAGGAGAATGTTGAGTGTGAGCTCGATGATCTCTGCCTCAAATACGAAGAGGACCTCCAGGAGGTGGAGGAGATCAACAGCAACCTTAAATATGAAATGGATCTCGTAGAGAAGCAGCTGTTGCAGTTCAGTAAATTGAAAAGAGAGTTACGGGATCGGGACCTGAGCATCCGTAAGCTAAAGGAGGACCTGAAGAACATGCAGGACCAACATAAAGATGCAGGAAACAAAATCAAGGAACTGACGAAGGAAAAGGAGGAGCAAAAGAAGATCACCTGTATACAGAAAAACCAAATCTCATCACTGCTTAAAAAGCTTGAGAGGTTCAACAAGGGATACGAATATGACTGTGTCACGCTGCAAAGCCAGCTGAAACAGCTGAGGCAAGAACGAGATAAATTGAAGAAAATCGTTCAACTAAAGGAAATCAAGCAACTGCAGAAAAAGATTGAAGAGAACAAGACAATCATCAAAGAGctcGAGACTGAGGTGATGAGGAACAACAGAAAGAACAAGGAGATCGTTGAGGACCTGAAGAAGAGGCTGACAACAAAGGATCAAGAGTTGTGCAATGAGAGGAACAGGGTCAGAAAGGAGAAAACTCTGGTGGAAAGGATGAAGGCCGACATCCAAAAGGGCTCCAACTTCCTTCAGCAGCCGAAGATGCTGTATGATTACTTCATGAAACTCCACAAATGCTACATCCAGAAAGCAGACGCGACACACGGGATAGATGCTGAGATCATGCTAGAGCACTCCAGGCAGAAGGGGTACGCGCAGAAGCGGATGAACGTTCAGAAGAAACAACACGCCATGGAGATGAATAACCAGCAGGCAGTTTGCACCAAGATCATGAAGGTGAGAACCATGATGGCTGAAGAGCTTAGCCAAGAGAGAACAAAGAACTACGAGATGCAGATGATCCTCGATAAGAAGAATTCCCCAACTGTTgaataACTTCATGCACAATGGGTTACAGTCATCTCTGAAATCCTGTACAGTGAGGTACAGCATTCTGGACTTGGACATGGCTAAAATTTCTTCACCCAGTTTAAAACACTCAAAAAGCATACATAATTTCAGCAGCGGTATCCTCGGAGGAGTCACTGAAGGAATCTCTACAAGACTCTGTACGCATAATCAATCCACAGCGCACAGAAATCCAGAGGCTAAAGACAGATATCATGGATAAAGGACAAGGCCCAGCTGCATGTCGGAGTTCCTCAGGCGCTTTACAGCTTCCACCCATTAACAAGAATTAGAACACCAGATGATCGCCAGGGACGTGTCGAATACTCAGATATCCTCTGGTGCGCGGGCGCAGGACACGCCGAGACCTTAAAGCTACTTCTTTTCAAGAATCTACTCACCAAGTGCCCATTAGGTCCATCCTTGTGCTCTCTAGTGAAGTTACCTGGGTAGGGGGGGTATTTCTGGGACAGgttgggggtgtgtgtggttggaCAGTTTGGATCCTGAGTGATCAGGAGTGCTCTAAAGGGTGTGAGCTGGCGGTGTCTGTACGCCTAGAGTGAATGGCGTAGCCAGTATATAGCCAGGGGGCGTAAAATAGCAGGTTTTAAGTGAGTGCCTTCTCTTGAGATGGGGGATGGACAGACTTCGTGTCTTTGTTGGAGATCTCAGCGTTAGAGGATATCCAGGTGTTTGACACCACCCCTGGCTGTCAGCTGTTACATTAAATAGGAAAACTGACaagtcagtaaataaataaataaatagtgacagtgaataataaattgtgtaACATTATGTAGttgattaaattattatttcattgttAGACTgagactttattttattttttattaataattttaaaaaaatatgtattttttaagcataatttgtaataaattttgTATTCAGTTATTCACAAAAATTACTTCCAGATAGCCGCTGATCACATGACAGTCACTTTCTGAATAGCAAACTCTGGATTAGTGTGTATTTTAAGGTTAAGCATCTGAGGGCAGTGAAGAAAAAGCTTTAGTGTGCAGTCACAGAGTGGCTGAAAGAAACTTACGCAAAACAAAAAGatgttatatacagtaattaagTCATGAATAACTGTTAGTAGTGCACTATACGGGGACCATTTATAGGGAGCGTGAAGGAGAATGAATGAGAGAAACAGGATTCAGGCTTAATCAGTGTTGAAGAAGAGAAATAGGATGCATCTTTCAGCAATACTTTTGGTcacatataatatacactataaggccaaaagtatgtggacacctgactatcacacaaacacacacacaagattcttccccaaactgtagccacaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918180.2 True 4947 mRNA 0.47 23 8172515 8186738

Neighbor

gene id symbol gene type direction distance location
LOC113528790 pm20d2,LOC108280227 coding upstream 1377 8162274 ~ 8171138 (+)
pnrc1 LOC108256521 coding upstream 15289 8153455 ~ 8157226 (+)
nt5e nt5e coding upstream 218529 7935258 ~ 7953986 (+)
mei4 mei4 coding upstream 302229 7818751 ~ 7870286 (+)
myo6a myo6 coding upstream 445872 7611855 ~ 7726643 (+)
arhgap39 arhgap39,LOC107672944,LOC107559071 coding downstream 6950 8193688 ~ 8234028 (+)
LOC113529048 tsta3,LOC107672947 coding downstream 48455 8235193 ~ 8254359 (+)
pycr3 pycrl coding downstream 69321 8256059 ~ 8260759 (+)
eef1db eef1d,LOC108259081 coding downstream 76337 8263075 ~ 8274248 (+)
si:ch211-221n20.8 LOC108261142 coding downstream 89054 8275792 ~ 8294879 (+)
G409693 NA non-coding upstream 47096 8104207 ~ 8125419 (+)
LOC113528831 NA non-coding upstream 238009 7926194 ~ 7934506 (+)
G409603 NA non-coding upstream 290127 7882167 ~ 7882388 (+)
G409602 NA non-coding upstream 293414 7878890 ~ 7879101 (+)
G409390 NA non-coding upstream 641219 7530925 ~ 7531296 (+)
G409896 NA non-coding downstream 204763 8391501 ~ 8394942 (+)
G409899 NA non-coding downstream 222969 8409707 ~ 8412059 (+)
G409997 NA non-coding downstream 340883 8527621 ~ 8529048 (+)
G410061 ust non-coding downstream 515212 8701950 ~ 8702384 (+)
G410065 NA non-coding downstream 531184 8717922 ~ 8718940 (+)
G409600 NA other upstream 293970 7877795 ~ 7878545 (+)
LOC117596594 NA other upstream 1101482 6764911 ~ 7071033 (+)
LOC117596573 LOC108280157 other upstream 1432988 6613273 ~ 6739527 (+)
LOC117596581 NA other upstream 1518497 6633365 ~ 6654018 (+)
G408929 NA other upstream 1530017 6556363 ~ 6642498 (+)
LOC113529148 NA other downstream 911639 9098377 ~ 9104224 (+)
G410936 snx3 other downstream 1991311 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 2010978 10197716 ~ 10230807 (+)
armc2 armc2 other downstream 2049243 10235981 ~ 10295205 (+)
G411297 NA other downstream 2577476 10764214 ~ 10764729 (+)

Expression


Co-expression Network