AMCG00000128 (LOC107698615,LOC107568572)


Basic Information

Item Value
gene id AMCG00000128
gene name LOC107698615,LOC107568572
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 4796369 ~ 4803426 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000128
TGCGCATCCAGAACGCGACCGAAGCCTTCCACCGACGCGCTTCGGGCCTTTCCGGATCATTCCGCGTAAATCCAAAGCAATAACAGACCCTCCTCCGTGGGATCTGTCACACGGAGATCAGCCTGCTGGTAGGCTGCGGTGACCTGACCCCCAGGAGGGGTCGAAGTTCAAAGTATGTTGTTCAAAAGAATCAAATATGGATTCCATTTTTCACGAGAAACACTGTCTCAACAACCTGCTGCAGGGAGAGTACTTCAGCCCCGTGGAGCTGTCCTCCATCGCACATCAACTGGATGAGGAGGAGAGGATGAGGATGGCGGAGGGTGGAGTTACCAGTGAGGAGTACAGGACCTTCCTGCAGCAACCTTCTGGGAATATGGATGACAGTGGCTTCTTTTCTATACAATGGTTTAATTTGAACTCTCTGCTGACGGGTCCAGAGCTGATTTCAGACACATACCTTGCTCTTTTCTTAGCACAGTTGCAACAAGAAGGTTACTCCATCTTCGTCATCGGAGGGAATCTCCCAGACTGTGAAGCGGACCAGATCCTGGGCATCATGAGGGTGGAGCAGAAGCAGAGACCAAAGCTGATTGGAGAAGAGGCGGCTCAGGCGGACGCCGGGCAGGGCCTGGTGGTGGAGAGACCGGTGGACACCAGTCATGGCATGGAAGGGGTTGCTGCGGATGAGGACGAGGAGAACCTGAGGAAGGCGCTCGCCCTCAGCCGACAAGACATCGAGGTGGAGGACGAGGAGGCGGACTTGCGGAGAGCTATCCAGCTCAGCATGCAAGGAAGTGTTCCAAGTGACCAAGACCCACCGTCTGCCTTAGATACAACCCTCGAGCGACCTGAATCCAAGAGCAGTCAGTAAGCCGTGGAGAATCCGCCACCAGCCCCAGATCACTCCCTGCAAATGCCCGTCCCTCTGATGCCGCTGACCCACAGCAGCGGGTCATCTCTGGGCGCTATCCACCGAGGACTGGGTTTGCAGAaagttgcaaaaaaaataaagaaaggaacattatgg

Function

NR:

description
PREDICTED: ataxin-3-like isoform X1

GO: NA

KEGG:

id description
K11863 ATXN3, MJD; Ataxin-3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000128 True 1030 mRNA 0.55 7 4796369 4803426

Neighbor

gene id symbol gene type direction distance location
AMCG00000120 NA coding upstream 35555 4756984 ~ 4760814 (+)
AMCG00000121 NA coding upstream 90443 4685589 ~ 4705926 (+)
AMCG00000110 NA coding upstream 442122 4324509 ~ 4354247 (+)
AMCG00000111 NA coding upstream 516104 4243648 ~ 4280265 (+)
AMCG00000112 NA coding upstream 571287 4191834 ~ 4225082 (+)
AMCG00000126 NA coding downstream 3742 4807168 ~ 4809507 (+)
AMCG00000127 NA coding downstream 34159 4837585 ~ 4843986 (+)
AMCG00000132 NA coding downstream 69874 4873300 ~ 4892210 (+)
AMCG00000133 NA coding downstream 128309 4931735 ~ 4934196 (+)
AMCG00000159 unc79,LOC106586068 coding downstream 137222 4940648 ~ 5085947 (+)
G148200 NA non-coding upstream 213818 4582311 ~ 4582551 (+)
G148146 mthfd1,LOC106952296,LOC105908326,LOC103136077 non-coding upstream 620653 4173437 ~ 4175716 (+)
G148143 NA non-coding upstream 634058 4160855 ~ 4162311 (+)
G148119 NA non-coding upstream 782966 4011654 ~ 4013403 (+)
G148075 NA non-coding upstream 916848 3876371 ~ 3879521 (+)
G148396 NA non-coding downstream 550525 5353951 ~ 5354185 (+)
G148402 NA non-coding downstream 579142 5382568 ~ 5388814 (+)
G148452 NA non-coding downstream 737253 5540679 ~ 5544478 (+)
G148459 NA non-coding downstream 874557 5677983 ~ 5678620 (+)
G148468 actn1,LOC100696265,LOC101469024,LOC106600942 non-coding downstream 912167 5715593 ~ 5719481 (+)
AMCG00000113 NA other upstream 603336 4112120 ~ 4193033 (+)
G148040 NA other upstream 1035745 3760179 ~ 3760624 (+)
AMCG00000093 srp14,LOC106610862 other upstream 1072053 3720985 ~ 3724316 (+)
AMCG00000094 NA other upstream 1097276 3690772 ~ 3699093 (+)
G147726 LOC104962440 other upstream 2392397 2403730 ~ 2403972 (+)
AMCG00000136 btbd7 other downstream 285013 5088439 ~ 5161195 (+)
AMCG00000145 NA other downstream 503764 5307190 ~ 5314953 (+)
AMCG00000146 NA other downstream 531087 5334513 ~ 5340550 (+)
AMCG00000142 NA other downstream 631732 5435158 ~ 5454206 (+)
AMCG00000166 srsf5,LOC106602985,LOC106611464 other downstream 1077597 5881023 ~ 5888027 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000360_00693283_00703172 ATXN3 coding CI01000360 null 693283 ~ 703172 (+)