AMCG00000112


Basic Information

Item Value
gene id AMCG00000112
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 4191834 ~ 4225082 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000112
CAACGAGCTGAAACATAGCAGGGCACTAACTGGGGATGGTTAGTGTGCAGCTCCAGCACTCACATTGCTCCTCCTGTGTTGAAATCATGGCGGATGAACCGCATTTGAGTGAGGGCTCATCTCCCGCTGAAGAGGTCTCCTCTCTCGGGAAGGCTCTGTCACACACCAGCCTGGACCGGCTGGAGTCGGACGCCTCTCAGCCTAGAGGGGTGCCGTACCGGAATGGTGTGGCGCAGTCTAGCCGGAGGAGGAGGCTCTCCAGCGGCCTGAGCTTCGACTCCGAGGAGGGACGGCTGAGCCCTTATTCTCAAATGCGAGTGCTGGTTATCAACACAGGAGGGACTATCGGTATGATGTACCATAATAACGTGCTGTGCCCTGAACCGAATACCTTTGTGAAGGCTCTTCGCAAGCTCCCCATCCTGCACGATGAGCAGTATGCCCAGCAGTCTGGTCTCTATGACTATTATAGTCCAGAGAGCACTTTAGTCCTGCCGCTTTCAAAGCAGAACAAGAGAATTGTTTACACTGTACTGGAGTATTGTCCATTACTGGATTCCTGTAATATGACTACTGACGATTGGGCAAAGATTGCAACAGATATCCAGGTGCCAATCTACGAGATGAGGAACGACGGCCGCGACAACCTCCTGGGTGCCCTGTTGATAGCTGGCCAGTTTGTGATACCCGAGGTCTGTCTGTACTTTCATCACAAACTGTACAGAGGGAACCGGGTGACCAAAGTGGATTCTGGGAGCTTCAACGCCTTCTCTTCTCCCAATCTTCCTCCTTTAGCCAACGCTGAAGTCgatataaaaattaatTGGGACACGGTATGGAGAGCCAACACGATAACCAGGTTTCATGTGCACACCATCATTAACCGGAACGTGGGCGTCCTGCGCCTCTTCCCGGGAATCACGTCAGAGACTCCTCCCATGGAAGGTGTTGTTCTGGAGACATACGGCTCTGGCAACGCCCCCAACAACCGCTGTGATCTGCTCGAAGAGTTCAAGAAGGCCAGCGACAGGGGCGTCCTCATGATCAACTGCACCCAGTGTCTGCGGGGTTCTGTCACCGAATCCTACGCCACCGGCAAGGACCTCAGTAATGCAGGCCTGATAGCAGGTTGTGACATGACGCCAGAAGCAGCACTTGCAAAACTGTCATACGTGCTGGCAAAGCAACAGCTCAGCTTGGCCGAGAAAAGGAAGATGTTGAGTGAAAACCTGAGGGGGGAGATGATTGCGTCCTTCCAGGGAGCCAAGTTGTCACTGAGAGACAGCAGGTTCATCCAGGTCATTGCAAAGTCCTTGAGCATCAGCTGCAAAGAGGAACTGGAAGCCGTCCGCGATGCCCTCACCCCAGCCTTGGCTTGCGCAGCTTCTAAAATCGGGGACACCAACGCCCTAGAAGCCATCCGAGAAATGGGTAGCAGCCTGAGCGGAGAGGACTACGATGGGAGGACTCCTCTCCATATCGCGGCCTGTGAGGGTCATCTGAAAGTTGTCCAGTACCTCCTGTGCCACGGGGCCACGGTCTACGCCAAGGACCGCTACGGTGCCACGCCCCTGACGAACGCAGTCAAGTTCAGACACAATGATGTCATCAAACTGCTGCGAAAGACAGGTGCCCATTTGTCCCAAGAGGAGCTGGAGGATGTGGGAACAGAGCTGTGCAGCTTGGCAGCCCTTGGAGACCTGGTTGGGCTGGAATCCTGGAGTCTGGCCGGCGTTGACATGAATGTAGTAGGCTATGATGGACATACCCCTCTGGAAGTGGCAAAAGCAGTTGGGAATAAGGACGTGATCGAGTTCCTGCAACATTCACACATTttaaatattttaagaaactgTTCCGAACTGTTTGAGAGACCAGATTTTGAGGACATTTTGCTACACATTTCTTCAATTCTGCAGCTTTACAGGAGGGAGAATACATCGAGTTTGTGTGCCCGAGACAAACCTGAGCTTTGGAAACACAGAACCTTCACTCAGAAGACACCGAAACAAAAAGCAGTGGCAGACCATGTATTCCCAAACTCCAGTATTGAGCAGACTGCACCGCCGTCTGCAATGGAGCCCACTGCTCCTGTCATACTAAgttttgaatgtaatttgaCTTGTAGGAGGATATTAAAATACTGCTTCCATCCTTCAAATGTACTGTTCGTACATATGCTAAGTGGTCAATAGAGAAAAAGGATTATTGCTGGTTGCAGGAAATGCGGAAATCCAATATGGACCTTGGAACTATACGGCTTTATTTGTTGTAAATGGAGTGTCACAGAAAGCACATGTATCTCATTATCTGAAACACCTGTTCAGTCACTACATTGTTGGAAGGGTGTCTGGACTTTGTGGATTGTACGATCGAGTAACGTTAAATTGAAGTTATTGGCACTGTCTAATTAAGTAACTAGTCTAAACACATTGTACATCACTATTTATCATGCTGCTTTGAGTCACAATGTAGAAGAATATCAGACTATCCTTGGTTTGTTCCTTCCCAACTATGTATCCCCAATTACTTGAGCTCAGGGACGCAGAAGGGTAATTAGCAAGACTAATTTCTCGGCAGGTTGACTTGAATtgctttgattttcattttaaatctaatttaacTGGATGTTGCATCTTTCTTTACAGAGGGCAACAGTTGCTACATTTCGGAGTACTGGAAGAAACAGGACTCAATGCATTTTCCCTTGTTTGTGGAAAAAGGACAAGGGACAAATATCTATGCAGACAAACTATGACTAATAAATAAGCCTAGAAACAAAATCCTGCTGAAAAAGCTGTTTTCCCTTGCAACCCAACAGATATTGATATTGTCTGAGTTGTAAGACAGCACAAGCAGCTTTGATTCTATCTGGCTAAGGCCAAGATGAAACATCAGCCCATCCACCAATTGCACCAGTGCTTGAAGATAGGCTTCCACTAGtcataaaaaagaacaaaaacaaatactgccATAATAAACTGGGTTAGTATATACTATATTAGTAGTACtcatctttttttcctccctaaTTCAGACAAATTGTCAAATTAATTTGATAAGCCATTTATagcatgtatatacacacacctttcataaataaatgtatatcctCAGACTATTTGTTGAATGTAAGAGAAGGAATTGGATCTTAATTGTGATTAGCTATTGAACAGTTTTAGAAAGAGCCATGGACCCTGATCAATCCAGATTTTAAAGTATAGGGTATTCAGCTGCTGCTACTACATACATTGTATTTCAGTAATCTCATTGTACTGTGTGCATATCTCCAGTATTACTGAGCCTGGCCTTTTGCCTGGTATGACAAAGTGTAAACCTGTTGTGTCCTGGTTTGAAGATTCACAAAGTATCATGATTGTGCTGGAGAGACTTGaatctgtgattttaattaGTAACAAAGTAGGCATTTAACACGGAAGTGTATGTGATCGGTTCAGCAAAGTATGGTCTTGAAGTGTTTTCTTGTTCGAAGTATGATGTGTGTTTCCCAGATTGAACAATACTGTCTTGTATTTCGTGTAAACCTATCACACCTGGTGATGTTCTCaagcacaaataaatgaataatgtgaaatattcatAAAA

Function

GO: NA

KEGG:

id description
K13278 ASPG; 60kDa lysophospholipase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000112 True 3606 mRNA 0.46 17 4191834 4225082

Neighbor

gene id symbol gene type direction distance location
AMCG00000114 NA coding upstream 56424 4131629 ~ 4135410 (+)
AMCG00000108 NA coding upstream 120400 4044112 ~ 4071434 (+)
AMCG00000109 myh6,LOC102786665,LOC103031694,LOC108251423,LOC107589804 coding upstream 182546 3998178 ~ 4009288 (+)
AMCG00000103 NA coding upstream 215411 3957641 ~ 3976423 (+)
AMCG00000104 NA coding upstream 251041 3928472 ~ 3940793 (+)
AMCG00000111 NA coding downstream 18566 4243648 ~ 4280265 (+)
AMCG00000110 NA coding downstream 99427 4324509 ~ 4354247 (+)
AMCG00000121 NA coding downstream 460507 4685589 ~ 4705926 (+)
AMCG00000120 NA coding downstream 531902 4756984 ~ 4760814 (+)
AMCG00000128 LOC107698615,LOC107568572 coding downstream 571287 4796369 ~ 4803426 (+)
G148146 mthfd1,LOC106952296,LOC105908326,LOC103136077 non-coding upstream 16118 4173437 ~ 4175716 (+)
G148143 NA non-coding upstream 29523 4160855 ~ 4162311 (+)
G148119 NA non-coding upstream 178431 4011654 ~ 4013403 (+)
G148075 NA non-coding upstream 312313 3876371 ~ 3879521 (+)
G148036 NA non-coding upstream 432831 3728325 ~ 3759003 (+)
G148200 NA non-coding downstream 357229 4582311 ~ 4582551 (+)
G148396 NA non-coding downstream 1128869 5353951 ~ 5354185 (+)
G148402 NA non-coding downstream 1157486 5382568 ~ 5388814 (+)
G148452 NA non-coding downstream 1315597 5540679 ~ 5544478 (+)
G148459 NA non-coding downstream 1452901 5677983 ~ 5678620 (+)
G148040 NA other upstream 431210 3760179 ~ 3760624 (+)
AMCG00000093 srp14,LOC106610862 other upstream 467518 3720985 ~ 3724316 (+)
AMCG00000094 NA other upstream 492741 3690772 ~ 3699093 (+)
G147726 LOC104962440 other upstream 1787862 2403730 ~ 2403972 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other upstream 2133064 2036023 ~ 2058770 (+)
AMCG00000136 btbd7 other downstream 863357 5088439 ~ 5161195 (+)
AMCG00000145 NA other downstream 1082108 5307190 ~ 5314953 (+)
AMCG00000146 NA other downstream 1109431 5334513 ~ 5340550 (+)
AMCG00000142 NA other downstream 1210076 5435158 ~ 5454206 (+)
AMCG00000166 srsf5,LOC106602985,LOC106611464 other downstream 1655941 5881023 ~ 5888027 (+)

Expression


Co-expression Network