RNA id: AMCG00000112


Basic Information

Item Value
RNA id AMCG00000112
length 3606
RNA type mRNA
GC content 0.46
exon number 17
gene id AMCG00000112
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 4191834 ~ 4225082 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACGAGCTGAAACATAGCAGGGCACTAACTGGGGATGGTTAGTGTGCAGCTCCAGCACTCACATTGCTCCTCCTGTGTTGAAATCATGGCGGATGAACCGCATTTGAGTGAGGGCTCATCTCCCGCTGAAGAGGTCTCCTCTCTCGGGAAGGCTCTGTCACACACCAGCCTGGACCGGCTGGAGTCGGACGCCTCTCAGCCTAGAGGGGTGCCGTACCGGAATGGTGTGGCGCAGTCTAGCCGGAGGAGGAGGCTCTCCAGCGGCCTGAGCTTCGACTCCGAGGAGGGACGGCTGAGCCCTTATTCTCAAATGCGAGTGCTGGTTATCAACACAGGAGGGACTATCGGTATGATGTACCATAATAACGTGCTGTGCCCTGAACCGAATACCTTTGTGAAGGCTCTTCGCAAGCTCCCCATCCTGCACGATGAGCAGTATGCCCAGCAGTCTGGTCTCTATGACTATTATAGTCCAGAGAGCACTTTAGTCCTGCCGCTTTCAAAGCAGAACAAGAGAATTGTTTACACTGTACTGGAGTATTGTCCATTACTGGATTCCTGTAATATGACTACTGACGATTGGGCAAAGATTGCAACAGATATCCAGGTGCCAATCTACGAGATGAGGAACGACGGCCGCGACAACCTCCTGGGTGCCCTGTTGATAGCTGGCCAGTTTGTGATACCCGAGGTCTGTCTGTACTTTCATCACAAACTGTACAGAGGGAACCGGGTGACCAAAGTGGATTCTGGGAGCTTCAACGCCTTCTCTTCTCCCAATCTTCCTCCTTTAGCCAACGCTGAAGTCgatataaaaattaatTGGGACACGGTATGGAGAGCCAACACGATAACCAGGTTTCATGTGCACACCATCATTAACCGGAACGTGGGCGTCCTGCGCCTCTTCCCGGGAATCACGTCAGAGACTCCTCCCATGGAAGGTGTTGTTCTGGAGACATACGGCTCTGGCAACGCCCCCAACAACCGCTGTGATCTGCTCGAAGAGTTCAAGAAGGCCAGCGACAGGGGCGTCCTCATGATCAACTGCACCCAGTGTCTGCGGGGTTCTGTCACCGAATCCTACGCCACCGGCAAGGACCTCAGTAATGCAGGCCTGATAGCAGGTTGTGACATGACGCCAGAAGCAGCACTTGCAAAACTGTCATACGTGCTGGCAAAGCAACAGCTCAGCTTGGCCGAGAAAAGGAAGATGTTGAGTGAAAACCTGAGGGGGGAGATGATTGCGTCCTTCCAGGGAGCCAAGTTGTCACTGAGAGACAGCAGGTTCATCCAGGTCATTGCAAAGTCCTTGAGCATCAGCTGCAAAGAGGAACTGGAAGCCGTCCGCGATGCCCTCACCCCAGCCTTGGCTTGCGCAGCTTCTAAAATCGGGGACACCAACGCCCTAGAAGCCATCCGAGAAATGGGTAGCAGCCTGAGCGGAGAGGACTACGATGGGAGGACTCCTCTCCATATCGCGGCCTGTGAGGGTCATCTGAAAGTTGTCCAGTACCTCCTGTGCCACGGGGCCACGGTCTACGCCAAGGACCGCTACGGTGCCACGCCCCTGACGAACGCAGTCAAGTTCAGACACAATGATGTCATCAAACTGCTGCGAAAGACAGGTGCCCATTTGTCCCAAGAGGAGCTGGAGGATGTGGGAACAGAGCTGTGCAGCTTGGCAGCCCTTGGAGACCTGGTTGGGCTGGAATCCTGGAGTCTGGCCGGCGTTGACATGAATGTAGTAGGCTATGATGGACATACCCCTCTGGAAGTGGCAAAAGCAGTTGGGAATAAGGACGTGATCGAGTTCCTGCAACATTCACACATTttaaatattttaagaaactgTTCCGAACTGTTTGAGAGACCAGATTTTGAGGACATTTTGCTACACATTTCTTCAATTCTGCAGCTTTACAGGAGGGAGAATACATCGAGTTTGTGTGCCCGAGACAAACCTGAGCTTTGGAAACACAGAACCTTCACTCAGAAGACACCGAAACAAAAAGCAGTGGCAGACCATGTATTCCCAAACTCCAGTATTGAGCAGACTGCACCGCCGTCTGCAATGGAGCCCACTGCTCCTGTCATACTAAgttttgaatgtaatttgaCTTGTAGGAGGATATTAAAATACTGCTTCCATCCTTCAAATGTACTGTTCGTACATATGCTAAGTGGTCAATAGAGAAAAAGGATTATTGCTGGTTGCAGGAAATGCGGAAATCCAATATGGACCTTGGAACTATACGGCTTTATTTGTTGTAAATGGAGTGTCACAGAAAGCACATGTATCTCATTATCTGAAACACCTGTTCAGTCACTACATTGTTGGAAGGGTGTCTGGACTTTGTGGATTGTACGATCGAGTAACGTTAAATTGAAGTTATTGGCACTGTCTAATTAAGTAACTAGTCTAAACACATTGTACATCACTATTTATCATGCTGCTTTGAGTCACAATGTAGAAGAATATCAGACTATCCTTGGTTTGTTCCTTCCCAACTATGTATCCCCAATTACTTGAGCTCAGGGACGCAGAAGGGTAATTAGCAAGACTAATTTCTCGGCAGGTTGACTTGAATtgctttgattttcattttaaatctaatttaacTGGATGTTGCATCTTTCTTTACAGAGGGCAACAGTTGCTACATTTCGGAGTACTGGAAGAAACAGGACTCAATGCATTTTCCCTTGTTTGTGGAAAAAGGACAAGGGACAAATATCTATGCAGACAAACTATGACTAATAAATAAGCCTAGAAACAAAATCCTGCTGAAAAAGCTGTTTTCCCTTGCAACCCAACAGATATTGATATTGTCTGAGTTGTAAGACAGCACAAGCAGCTTTGATTCTATCTGGCTAAGGCCAAGATGAAACATCAGCCCATCCACCAATTGCACCAGTGCTTGAAGATAGGCTTCCACTAGtcataaaaaagaacaaaaacaaatactgccATAATAAACTGGGTTAGTATATACTATATTAGTAGTACtcatctttttttcctccctaaTTCAGACAAATTGTCAAATTAATTTGATAAGCCATTTATagcatgtatatacacacacctttcataaataaatgtatatcctCAGACTATTTGTTGAATGTAAGAGAAGGAATTGGATCTTAATTGTGATTAGCTATTGAACAGTTTTAGAAAGAGCCATGGACCCTGATCAATCCAGATTTTAAAGTATAGGGTATTCAGCTGCTGCTACTACATACATTGTATTTCAGTAATCTCATTGTACTGTGTGCATATCTCCAGTATTACTGAGCCTGGCCTTTTGCCTGGTATGACAAAGTGTAAACCTGTTGTGTCCTGGTTTGAAGATTCACAAAGTATCATGATTGTGCTGGAGAGACTTGaatctgtgattttaattaGTAACAAAGTAGGCATTTAACACGGAAGTGTATGTGATCGGTTCAGCAAAGTATGGTCTTGAAGTGTTTTCTTGTTCGAAGTATGATGTGTGTTTCCCAGATTGAACAATACTGTCTTGTATTTCGTGTAAACCTATCACACCTGGTGATGTTCTCaagcacaaataaatgaataatgtgaaatattcatAAAA

Function

GO: NA

KEGG:

id description
K13278 ASPG; 60kDa lysophospholipase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186391 lncRNA upstream 16118 4173437 ~ 4175716 (+) True G148146
TU186388 lncRNA upstream 29523 4160855 ~ 4162311 (+) True G148143
TU186372 lncRNA upstream 71720 4116753 ~ 4120114 (+) True AMCG00000113
TU186359 lncRNA upstream 178431 4011654 ~ 4013403 (+) True G148119
TU186304 lncRNA upstream 312313 3876371 ~ 3879521 (+) True G148075
TU186462 lncRNA downstream 357229 4582311 ~ 4582551 (+) True G148200
TU186651 lncRNA downstream 863357 5088439 ~ 5161195 (+) False AMCG00000136
TU186654 lncRNA downstream 907527 5132609 ~ 5159533 (+) False AMCG00000136
TU186722 lncRNA downstream 1087796 5312878 ~ 5314953 (+) False AMCG00000145
TU186736 lncRNA downstream 1114664 5339746 ~ 5340548 (+) False AMCG00000146
AMCG00000114 mRNA upstream 56424 4131629 ~ 4135410 (+) True AMCG00000114
AMCG00000113 mRNA upstream 71854 4116939 ~ 4119980 (+) False AMCG00000113
AMCG00000108 mRNA upstream 120400 4044112 ~ 4071434 (+) True AMCG00000108
AMCG00000109 mRNA upstream 182546 3998178 ~ 4009288 (+) True AMCG00000109
AMCG00000103 mRNA upstream 215411 3957641 ~ 3976423 (+) True AMCG00000103
AMCG00000111 mRNA downstream 18566 4243648 ~ 4280265 (+) True AMCG00000111
AMCG00000110 mRNA downstream 99427 4324509 ~ 4354247 (+) True AMCG00000110
AMCG00000121 mRNA downstream 460507 4685589 ~ 4705926 (+) True AMCG00000121
AMCG00000120 mRNA downstream 531902 4756984 ~ 4760814 (+) True AMCG00000120
AMCG00000128 mRNA downstream 571287 4796369 ~ 4803426 (+) True AMCG00000128
TU186262 other upstream 431210 3760179 ~ 3760624 (+) True G148040
TU186257 other upstream 467518 3720985 ~ 3724316 (+) True AMCG00000093
TU186234 other upstream 496032 3693109 ~ 3695802 (+) False AMCG00000094
TU185878 other upstream 1787862 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 3074884 1063085 ~ 1116950 (+) True G147416
TU186772 other downstream 1210076 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 1655941 5881023 ~ 5888027 (+) True AMCG00000166
TU187068 other downstream 2246349 6471431 ~ 6474232 (+) True AMCG00000201
TU187079 other downstream 2291425 6516507 ~ 6520822 (+) False AMCG00000198
TU187266 other downstream 3065584 7290666 ~ 7296664 (+) False AMCG00000216

Expression Profile