RNA id: AMCG00000108


Basic Information

Item Value
RNA id AMCG00000108
length 783
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00000108
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 4044112 ~ 4071434 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgagagagagggacttCATGCCCAGTATGGAGAGGGGCAAACCTGCCACATACACGGGGGACAAAAAGGCAAAGATGGCTGCGAAGACCAACAAAAAGTGGGTGAGACTGGCCACCGTTTTTGCCTATGTGTTATCCGTCTCCTTGGCTGCCATCATTTTGGCGATTTATTACAGCCTGATTTGGAAACCAACATCTGCTTCTACAGCAACCGCAGCCCCAAACACCCCCCACACAGCAACAACCAGCAGCCTTGCCCCCACGGAGAACGGGACCAGTTCCAATCAGACAGACCTCATATCGGCCACTGATGCCCCGGGCTCGACGGGCGCGATGGGCTCTGATCAGCAGAGCACGTCTGACGGCTCTGGAGTCACTTCGCCCTTGGTGGACAGGGACACAACAGAGGCGCCGGGGCCGGTCAGTAGTAATATCAGTGGAGTACGACGGATGAGCCTTGAAGAAACGGGGTCTGATTTCATAGTTGGTGATGTAGCAAGACATCAGATAACCCCTTCCCAGGCCCCAGCCGTTGGTTCCTCAAATGCAAAAGACCTGCAATGGGGACAGACAACGGCCCAGGCCGGGGAGACCACCCAGAGACAGGCGCAGCAGCTGAGAGATGCAAACCATGAGCTGGATACAACAGAGGGGTCTTCTTACTTATTTGAGCACCTAGTTTCTAAAGACACAGAGGATTCAACACCAAGACAGAAACGGTACAAAAAGGCCACACCCAATGGTTCCCGCTGGTACCCAACAAGCCTCTGCAAGCTGTCATAA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186359 lncRNA upstream 30709 4011654 ~ 4013403 (+) True G148119
TU186304 lncRNA upstream 164591 3876371 ~ 3879521 (+) True G148075
TU186258 lncRNA upstream 285109 3728325 ~ 3759003 (+) True G148036
TU186231 lncRNA upstream 355881 3687963 ~ 3688231 (+) True G148010
TU186210 lncRNA upstream 412657 3630582 ~ 3631455 (+) True G147994
TU186373 lncRNA downstream 40686 4112120 ~ 4193033 (+) False AMCG00000113
TU186372 lncRNA downstream 45319 4116753 ~ 4120114 (+) True AMCG00000113
TU186374 lncRNA downstream 45319 4116753 ~ 4193033 (+) False AMCG00000113
TU186388 lncRNA downstream 89421 4160855 ~ 4162311 (+) True G148143
TU186391 lncRNA downstream 102003 4173437 ~ 4175716 (+) True G148146
AMCG00000109 mRNA upstream 34824 3998178 ~ 4009288 (+) True AMCG00000109
AMCG00000103 mRNA upstream 67689 3957641 ~ 3976423 (+) True AMCG00000103
AMCG00000104 mRNA upstream 103319 3928472 ~ 3940793 (+) True AMCG00000104
AMCG00000102 mRNA upstream 128159 3906422 ~ 3915953 (+) True AMCG00000102
AMCG00000093 mRNA upstream 321482 3722029 ~ 3722630 (+) False AMCG00000093
AMCG00000113 mRNA downstream 45505 4116939 ~ 4119980 (+) False AMCG00000113
AMCG00000114 mRNA downstream 60195 4131629 ~ 4135410 (+) True AMCG00000114
AMCG00000112 mRNA downstream 120400 4191834 ~ 4225082 (+) True AMCG00000112
AMCG00000111 mRNA downstream 172214 4243648 ~ 4280265 (+) True AMCG00000111
AMCG00000110 mRNA downstream 253075 4324509 ~ 4354247 (+) True AMCG00000110
TU186262 other upstream 283488 3760179 ~ 3760624 (+) True G148040
TU186257 other upstream 319796 3720985 ~ 3724316 (+) True AMCG00000093
TU186234 other upstream 348310 3693109 ~ 3695802 (+) False AMCG00000094
TU185878 other upstream 1640140 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 2927162 1063085 ~ 1116950 (+) True G147416
TU186772 other downstream 1363724 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 1809589 5881023 ~ 5888027 (+) True AMCG00000166
TU187068 other downstream 2399997 6471431 ~ 6474232 (+) True AMCG00000201
TU187079 other downstream 2445073 6516507 ~ 6520822 (+) False AMCG00000198
TU187266 other downstream 3219232 7290666 ~ 7296664 (+) False AMCG00000216

Expression Profile