RNA id: TU186359


Basic Information

Item Value
RNA id TU186359
length 1720
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G148119
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 4011654 ~ 4013403 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAAGCttgttaacaaaatgtatttccccctctccccattAAAATAACTCATGCCAcagacattaaaatacaattccagCATTTTCATTTGACATTACCATAAGATTTTACTTTGGAAGATGACAGAAAGACGTTTCCCACAacctcaataaaacaaaataaaataaaaaaaaagcatagtgTTTTCTACcttacataataattaattacttttatataacaaatattttatatggtGCAtggtttgaaaataataaaaaaatataacattccAAAATTGTTCTAAATCATTGCAGACAAGAATTAGTCCGGAGAGCTAAAGGTCTTTTTTTAagtgcttatatatatatatatatatatatatatatatataagaataagCATGCAACCCATCAGGTATATTGttctaaataatatatttagtgTTATAGTTTGATTGCTGCTTTATTcattattagattattttaacagtttttggACAGTGTAAATTATGACTAGTGTATAATGTAGTGCAGaagataacaacaacaaaaaaaagcctACCTCTAAActtcttttggttttgttgggTTTTTGGGTAAGTTCAGAAATATGTAAGCAAAGAGCATtaattctgtaaaacaaatataaattcaaattcacATAGTTAATATATCCTTATTGTCTTGTGagatacaattattatatatatatattacattagcTTTCCCTTTATCCTTATTAACCAAGTTACATGCAAATACTAACCAGTTGCTTGTTTTActcaaatatgtttatatagaTGCAATCTGTAAGTCTTTGGAATGAGTGTCCCCATTTTCTAGTTCTGCTCCCTTTATCATTAAAGCCTTTTTTACTTTAGCCTTTTCCTTGGACAAAGAGTGCTGTCAGCCAGTTATAGTTAAATTTgcttcaaattaattaatctcttGTTCCATAGTAATGCAATTACAGACAGCATTTGCGGATGATCTTTGTGGCATTTACCGCTTCACTGCTGCAGATGGCCTGATATAAAGGCATaatgcttttcttattttttgtaaaactaGGTTAGTGGCTATATCTTCACTCATTCATAATCATtctttacactttaaaaacatacttGGAAAGGGAATGAGCTGCTTAAGATATATAATCATTGTCTTTTAAAGCAACTGCACATTACACAACATGTTAAAATATCACTCTCTCTGAGACTGTTAGGGTTTATTTGGAGgaagtgtttttcagtttctgtaaTGTTGAGAATTGTGATTCAGGTTGGTACCTGCTTAATGAAACATAGTACAGTACTGTCAaggttttcatgtttaaattttaaaactTTGTAAATCATTTAGTCAACCTACTTTTTTGTACCCCTTTATGTGGCCTCTCCACCCTACTGCTGCAGGTATACGAACTGCAATAAATAAGCCTGACACTAACCCATATTTCTTTCcctgaattaaaatgtacaatgaataaatgtatcaaaatcAATGATTAAGTTCCCACACCCCAATGATAAAACACCACCAAGGTTAAAGTGGGTCTAGCCTAGATAGACATTCCCGTAATCGCTACCGTCCCCCTGGTCACCATTGGCcgtcttctcctcctctttgtCCACCTGGTCTGGGTAGTGGGGGCTGACACACGAGTTCACGGTTTCTCTGACATGGCTGGGAAGGCCCTTCATCTTCTTGTCATATTCAGAGCTGGCTTCCTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186304 lncRNA upstream 132133 3876371 ~ 3879521 (+) True G148075
TU186258 lncRNA upstream 252651 3728325 ~ 3759003 (+) True G148036
TU186231 lncRNA upstream 323423 3687963 ~ 3688231 (+) True G148010
TU186210 lncRNA upstream 380199 3630582 ~ 3631455 (+) True G147994
TU186027 lncRNA upstream 715786 3216784 ~ 3295868 (+) True G147856
TU186373 lncRNA downstream 98717 4112120 ~ 4193033 (+) False AMCG00000113
TU186372 lncRNA downstream 103350 4116753 ~ 4120114 (+) True AMCG00000113
TU186374 lncRNA downstream 103350 4116753 ~ 4193033 (+) False AMCG00000113
TU186388 lncRNA downstream 147452 4160855 ~ 4162311 (+) True G148143
TU186391 lncRNA downstream 160034 4173437 ~ 4175716 (+) True G148146
AMCG00000109 mRNA upstream 2366 3998178 ~ 4009288 (+) True AMCG00000109
AMCG00000103 mRNA upstream 35231 3957641 ~ 3976423 (+) True AMCG00000103
AMCG00000104 mRNA upstream 70861 3928472 ~ 3940793 (+) True AMCG00000104
AMCG00000102 mRNA upstream 95701 3906422 ~ 3915953 (+) True AMCG00000102
AMCG00000093 mRNA upstream 289024 3722029 ~ 3722630 (+) False AMCG00000093
AMCG00000108 mRNA downstream 30709 4044112 ~ 4071434 (+) True AMCG00000108
AMCG00000113 mRNA downstream 103536 4116939 ~ 4119980 (+) False AMCG00000113
AMCG00000114 mRNA downstream 118226 4131629 ~ 4135410 (+) True AMCG00000114
AMCG00000112 mRNA downstream 178431 4191834 ~ 4225082 (+) True AMCG00000112
AMCG00000111 mRNA downstream 230245 4243648 ~ 4280265 (+) True AMCG00000111
TU186262 other upstream 251030 3760179 ~ 3760624 (+) True G148040
TU186257 other upstream 287338 3720985 ~ 3724316 (+) True AMCG00000093
TU186234 other upstream 315852 3693109 ~ 3695802 (+) False AMCG00000094
TU185878 other upstream 1607682 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 2894704 1063085 ~ 1116950 (+) True G147416
TU186772 other downstream 1421755 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 1867620 5881023 ~ 5888027 (+) True AMCG00000166
TU187068 other downstream 2458028 6471431 ~ 6474232 (+) True AMCG00000201
TU187079 other downstream 2503104 6516507 ~ 6520822 (+) False AMCG00000198
TU187266 other downstream 3277263 7290666 ~ 7296664 (+) False AMCG00000216

Expression Profile