RNA id: TU186210



Basic Information


Item Value
RNA id TU186210
length 484
lncRNA type inter_gene
GC content 0.64
exon number 2
gene id G147994
representative True

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3630582 ~ 3631455 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCCAGACCCGCTCAGACCCGCTTGACCTGACTCGGTTCGTCCGGGGCGTCAGGTCGGGCCGGTCGGGCGGGCGGCCGCTCGGCGCTGCTTGCGTCACTCCTGCTAACCTGCCGGGCGGCTGGAGGCGGCGCTGCTCCGTGCGCACAGCGGAGGATGCCATAACAGCGCCCAGACGCAGGGCTTCAGCACAGGGCGTGTGTGTGTCGGTCACCTGGAGCCGCTGCGCCCCCCAGACGTGCGCAGAAAGAGGATCCAAATTCAATCCTTCCACAGCGCACTGCGGAGGCTCCGGCGTCCCTTTCATGGTGATCTCGACGGCCGGCTGCTGCTTTTCGGTGGGAATCGCGGAATATAGGCTGTGCAGTGCCACAGAAAGACGCAGGCGGTGATGGGAGATGTCTGTCTGGGCTCTGGTGCCACTGTCCTGCACCAGCTGCTCTGTCTGCTCGGGTTATTTTCCAAATAATTTCCCCAGTGGATTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU186027 lncRNA upstream 334714 3216784 ~ 3295868 (+) True G147856
TU186011 lncRNA upstream 491393 3135920 ~ 3139189 (+) True G147842
TU185979 lncRNA upstream 594236 3035019 ~ 3036346 (+) True G147814
TU185974 lncRNA upstream 604793 3025378 ~ 3025789 (+) True G147809
TU185973 lncRNA upstream 607314 3022938 ~ 3023268 (+) True G147808
TU186231 lncRNA downstream 56508 3687963 ~ 3688231 (+) True G148010
TU186258 lncRNA downstream 96870 3728325 ~ 3759003 (+) True G148036
TU186304 lncRNA downstream 244916 3876371 ~ 3879521 (+) True G148075
TU186359 lncRNA downstream 380199 4011654 ~ 4013403 (+) True G148119
TU186373 lncRNA downstream 480665 4112120 ~ 4193033 (+) False AMCG00000113
AMCG00000083 mRNA upstream 89426 3538688 ~ 3541156 (+) True AMCG00000083
AMCG00000082 mRNA upstream 93848 3523600 ~ 3536734 (+) True AMCG00000082
AMCG00000081 mRNA upstream 160618 3464363 ~ 3469964 (+) True AMCG00000081
AMCG00000079 mRNA upstream 166276 3443513 ~ 3464306 (+) True AMCG00000079
AMCG00000078 mRNA upstream 214025 3403359 ~ 3416557 (+) True AMCG00000078
AMCG00000090 mRNA downstream 16351 3647806 ~ 3680717 (+) True AMCG00000090
AMCG00000094 mRNA downstream 59317 3690772 ~ 3699093 (+) True AMCG00000094
AMCG00000089 mRNA downstream 83209 3714664 ~ 3720675 (+) True AMCG00000089
AMCG00000093 mRNA downstream 90574 3722029 ~ 3722630 (+) False AMCG00000093
AMCG00000102 mRNA downstream 274967 3906422 ~ 3915953 (+) True AMCG00000102
TU185878 other upstream 1226610 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 2513632 1063085 ~ 1116950 (+) True G147416
TU185369 other upstream 3132071 449652 ~ 498511 (+) True G147311
TU185240 other upstream 3383577 240502 ~ 247005 (+) True AMCG00000032
TU185255 other upstream 3565293 64746 ~ 65289 (+) False AMCG00000025
TU186234 other downstream 61654 3693109 ~ 3695802 (+) False AMCG00000094
TU186257 other downstream 89530 3720985 ~ 3724316 (+) True AMCG00000093
TU186262 other downstream 128724 3760179 ~ 3760624 (+) True G148040
TU186772 other downstream 1803703 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 2249568 5881023 ~ 5888027 (+) True AMCG00000166

Expression Profile