RNA id: TU186231


Basic Information

Item Value
RNA id TU186231
length 269
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G148010
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3687963 ~ 3688231 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTTTGTTCCACATTTGAGCTTGGGCAATAATTCAGAACCTTTCTGAAATGTTCACGTCTGTCCTAGAAATACTTTTGTCttgatgtttgtatttatttatgtactttgaCACAACTGCTCGTATTTAGTGCAATCCTAATGCAGGAGAGCTAATGTTAGCTAATACTCTGCTATTTAGTTACTTCACATAAGTTGCCATTGTATTGATTGTCTGTATGTTTGATTAGCTacatgtttagagagggacctgttttCACTGTAGTTAGG

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
ko03010 Ribosome
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186210 lncRNA upstream 56508 3630582 ~ 3631455 (+) True G147994
TU186027 lncRNA upstream 392095 3216784 ~ 3295868 (+) True G147856
TU186011 lncRNA upstream 548774 3135920 ~ 3139189 (+) True G147842
TU185979 lncRNA upstream 651617 3035019 ~ 3036346 (+) True G147814
TU185974 lncRNA upstream 662174 3025378 ~ 3025789 (+) True G147809
TU186258 lncRNA downstream 40094 3728325 ~ 3759003 (+) True G148036
TU186304 lncRNA downstream 188140 3876371 ~ 3879521 (+) True G148075
TU186359 lncRNA downstream 323423 4011654 ~ 4013403 (+) True G148119
TU186373 lncRNA downstream 423889 4112120 ~ 4193033 (+) False AMCG00000113
TU186372 lncRNA downstream 428522 4116753 ~ 4120114 (+) True AMCG00000113
AMCG00000090 mRNA upstream 7246 3647806 ~ 3680717 (+) True AMCG00000090
AMCG00000083 mRNA upstream 146807 3538688 ~ 3541156 (+) True AMCG00000083
AMCG00000082 mRNA upstream 151229 3523600 ~ 3536734 (+) True AMCG00000082
AMCG00000081 mRNA upstream 217999 3464363 ~ 3469964 (+) True AMCG00000081
AMCG00000079 mRNA upstream 223657 3443513 ~ 3464306 (+) True AMCG00000079
AMCG00000094 mRNA downstream 2541 3690772 ~ 3699093 (+) True AMCG00000094
AMCG00000089 mRNA downstream 26433 3714664 ~ 3720675 (+) True AMCG00000089
AMCG00000093 mRNA downstream 33798 3722029 ~ 3722630 (+) False AMCG00000093
AMCG00000102 mRNA downstream 218191 3906422 ~ 3915953 (+) True AMCG00000102
AMCG00000104 mRNA downstream 240241 3928472 ~ 3940793 (+) True AMCG00000104
TU185878 other upstream 1283991 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 2571013 1063085 ~ 1116950 (+) True G147416
TU185369 other upstream 3189452 449652 ~ 498511 (+) True G147311
TU185240 other upstream 3440958 240502 ~ 247005 (+) True AMCG00000032
TU185255 other upstream 3622674 64746 ~ 65289 (+) False AMCG00000025
TU186234 other downstream 4878 3693109 ~ 3695802 (+) False AMCG00000094
TU186257 other downstream 32754 3720985 ~ 3724316 (+) True AMCG00000093
TU186262 other downstream 71948 3760179 ~ 3760624 (+) True G148040
TU186772 other downstream 1746927 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 2192792 5881023 ~ 5888027 (+) True AMCG00000166

Expression Profile