RNA id: AMCG00000082


Basic Information

Item Value
RNA id AMCG00000082
length 3306
RNA type mRNA
GC content 0.43
exon number 13
gene id AMCG00000082
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3523600 ~ 3536734 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGATCTGAGGTGAAACGCGGCTCTGCGGGGTTATTTCGGACGGGCGGCATCTGCGAGTGCGCTGCTGTAAACATGTCGGGCGGCTGGACAGTCAACGAGCACAAGAACCACACAAACCCACCCGGGTCTGGGGTGAAGCGACCCCGCAGCGACTCGGGCAACAGGGTGACGGTGGTCCTGGGGGCGCAATGGGGAGACGAAGGCAAAGGAAAGGTGGTCGACTTGCTGGCGACAGAGTCCGACATTGTGTGCCGGTGCCAGGGTGGAAACAACGCAGGACACACAGTGGTAGTGGAAGGgaaagaatatgattttcacCTCCTGCCCAGTGGAATTATCAACCCCAAAGCAGTGTCCTTCATTGGAAATGGGGTTGTGATTCATCTGCCAGGCTTGTTTGAAGAGGGtgataaaaatggaaagaaagGGCTGAAGGACTGGGAAAAAAGACTGATAATTTCTGACCGTGCCCATATTGTGTTCGATTTCCATCAGGCTGTGGATGGGCTCCAGGAGGTCCAACGACAGGAGcaagaggggaaaaaTATTGGAACTACTAAAAAGGGCATCGGACCCACGTATTCCAGCAAAGCAGCACGAACTGGCCTGCGTGTGTGTGACCTACTAGCTGATTTCAAGGACTTCTCTGCCAGGTTTAAAAATCTAGCCCAGCAGTACCAATCCATGTTCCCCACCCTGGAAGTAGATGTTGACGGTCAGCTGAAAAAACTTAAGGAATATGCCGAGAGGATACGACCCATGGTGAGAGACGGTGTGTATTTCATGTATGAAGCCATTCATGGCCCCCAGAAGAAAATCCTAGTCGAAGGTGCTAATGCAGCCCTGCTTGACATTGACTTTGGAACGTACCCTTTTGTGACCTCCTCGAACTGCACAGTGGGTGGCGTGTGCACTGGCCTGGGCATCCCCCCGCAGAACATCGGCGAGGTCTATGGAGTAGTGAAGGCCTACACCACCAGAGTGGGCATCGGGGCCTTCCCCACAGAACAAACCAACGAGATTGGAGAGCTGCTGCAGTCCAGAGGCCACGAGGTGGGAGTGACCACAGGCAGGAAGAGGCGTTGTGGCTGGCTGGACCTCGTCATTCTCCGATATGCAAATATGATCAATGGATTCACTGCGTTCGCACTGACAAAGCTGGATATTCTGGATTCGCTGGATGAGATCAAAGTGGGCATCGCCTACAAGCTCAATGGCAAAAGGATTCCCTATTTCCCAGCAAACATGGAGATCCTACAGAAAGTGGAGGTGGATTATGAGACTCTGCCAGGCTGGAAGAGCGACACCACTGCGGCAAGGAAGTGGGACGACCTGCCACCCAAGGCACAGAACTACATCCGATTTGTGGAGAACCATATTGGCATTCCCATAAAATGGGTTGGGGTTGGAAAGTCAAGAGAGTCCATGATCCAGATGTTCTAGACACAGACCTGCCTCCCTTTGGTCAAGACAGATGTGCTCATAATGGCTGTGCTCCTGTCAATTTCCTTTTTAACCCTGCAGATGTTTTGGGGTCATTTTAACCAAATGTTATGCATAACTAGGGGAGTCAACAGAGTTAATTACACTTACACAGCCAAGGGTTTTTGTATCCATCATTTAGACTGATTTTGCTTGTGTATGATTTGgggtgttttttgttaattttcatACCTATTGGGTTAGACTTTATTGTGGTGGAAGGCTTGCTAGAATGAAGAAGCTGGGCAGCAATGTAATGTGAAAAAGCTTTATGTTGAGCATGAAGCTGTTAATGATGAAAAGGCAAACTGGTGaattttttctttgcatttcattaagCTCTCATAGCAAAACATCCTCCACAGTGATTAAGAACACTAAAACACTGAATTGCCTACAATCAACATTCTTTACAGCGTTCCTTCAGATGTGTTAACATAACTAACACAGGTTATCATAGGTGAGCTGAAGTTTATCAAGTTTAGTCCCTTCCAAATTTCCTTGACTTCATCTCGGATACAGTTTGTGTTCTTTCTCAAGTTGTGGACGTTATATGTGTGCTTTTCTCtccagggaaaaataaaaaatctgaagcCCACTGAAACAGCCTCAATGCAGCAGGTGAGGCCAAcaggttttaaatgtaatactgcCATAAGATAGAGTACAGAGGGCAACAGGTAGCCATTTTTACTGTGTTCGCAATCCTTTCCTTCTTCATGTGGTGCTGTATACCTTTTATCAAGAAGTTGGACCCAACAGATAAATGAATAACCcctggtttgttttattgtttttaaggatAAATATCCTCAAAGTTCTTTTGCATAGACTTGAATTAAACCCTGGCCAGTACCTGATGCCATAGCCTAGCTTGCTGCTTATTcagttgcttgtttttttaaatacagaagcaCTATAGAAATGTTCACAAgccattttattgtattattgtaatattgttaaaattggcattttgtattttttatgttttactcatgttttaagtgctgtttttatttccccaaacAGAGTGAAATGTTTGATGTTTGGTTGGCCCTCATTGCCAACAGTTTTAAAGtgcttacatttaaattcaggAGTAAAGAGATCTCTCACACTTctggattaatcattattacaaaACATACGAGTGAGAAAAAGTGTATCCTTTCACTGGAATGACTTCTGAACAACATGTTATGCCTAGCCTAATTGACTCTGATGATTCTGTTGGACAGGCAAGCATCCAAGAAGGGTTACTGCAACTGACTTCAGTGCATGGCTGTGTGTAAgaactgtaaatgtacagtccaaataaaatcaattgcacattgtttactttttttaatggaggGACTTTAGACCTATATGATGGGGTCTGGATCTAGGTCTGTCCAATATCTTAATCTTTCTACTTGCAAgtcaaattaacaaatatattatgttatCCATAATATCTCCTAGCATGTAACATAATTGACATTACAGGATTAGTGTTACAACATTACAGTAAACTAGGAAAATACTTTACAACTCCTGTTAAACATCAAAAGCTGTTTCCTTTGTGGAAAATTGAGTTGGTAATAACTCTTAATACAGTTTCAAGTTCTGACGAAAAGAAccattcttattcttattattcaatcaatattttcttgtatattttaactttttgctTCATCTTGTCATTGCTGATTTTCAAATTGTTCGATATAGTTTGCTAATGCATTTCACAGTCATTAAAAACTGATTGCTACAAAATGAAAGGGAACCTGAAAACATTCAAGTAGAGAATGATATGTGGTTAATGTGGatgtttt

Function

GO:

id name namespace
GO:0044208 'de novo' AMP biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0004019 adenylosuccinate synthase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01939 purA, ADSS; adenylosuccinate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186027 lncRNA upstream 227732 3216784 ~ 3295868 (+) True G147856
TU186011 lncRNA upstream 384411 3135920 ~ 3139189 (+) True G147842
TU185979 lncRNA upstream 487254 3035019 ~ 3036346 (+) True G147814
TU185974 lncRNA upstream 497811 3025378 ~ 3025789 (+) True G147809
TU185973 lncRNA upstream 500332 3022938 ~ 3023268 (+) True G147808
TU186210 lncRNA downstream 93848 3630582 ~ 3631455 (+) True G147994
TU186231 lncRNA downstream 151229 3687963 ~ 3688231 (+) True G148010
TU186258 lncRNA downstream 191591 3728325 ~ 3759003 (+) True G148036
TU186304 lncRNA downstream 339637 3876371 ~ 3879521 (+) True G148075
TU186359 lncRNA downstream 474920 4011654 ~ 4013403 (+) True G148119
AMCG00000081 mRNA upstream 53636 3464363 ~ 3469964 (+) True AMCG00000081
AMCG00000079 mRNA upstream 59294 3443513 ~ 3464306 (+) True AMCG00000079
AMCG00000078 mRNA upstream 107043 3403359 ~ 3416557 (+) True AMCG00000078
AMCG00000075 mRNA upstream 415725 3076185 ~ 3107875 (+) True AMCG00000075
AMCG00000085 mRNA upstream 663416 2858153 ~ 2860184 (+) True AMCG00000085
AMCG00000083 mRNA downstream 1954 3538688 ~ 3541156 (+) True AMCG00000083
AMCG00000090 mRNA downstream 111072 3647806 ~ 3680717 (+) True AMCG00000090
AMCG00000094 mRNA downstream 154038 3690772 ~ 3699093 (+) True AMCG00000094
AMCG00000089 mRNA downstream 177930 3714664 ~ 3720675 (+) True AMCG00000089
AMCG00000093 mRNA downstream 185295 3722029 ~ 3722630 (+) False AMCG00000093
TU185878 other upstream 1119628 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 2406650 1063085 ~ 1116950 (+) True G147416
TU185369 other upstream 3025089 449652 ~ 498511 (+) True G147311
TU185240 other upstream 3276595 240502 ~ 247005 (+) True AMCG00000032
TU185255 other upstream 3458311 64746 ~ 65289 (+) False AMCG00000025
TU186234 other downstream 156375 3693109 ~ 3695802 (+) False AMCG00000094
TU186257 other downstream 184251 3720985 ~ 3724316 (+) True AMCG00000093
TU186262 other downstream 223445 3760179 ~ 3760624 (+) True G148040
TU186772 other downstream 1898424 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 2344289 5881023 ~ 5888027 (+) True AMCG00000166

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022334 True 4028 mRNA 0.44 13 NC_007128.7 1323699 ~ 1355790 (+)