RNA id: AMCG00000093


Basic Information

Item Value
RNA id AMCG00000093
length 150
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00000093
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3720985 ~ 3724316 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGGAAGAACCAAACCTGTACCCAGGAAAGGCAATCCAGAGACATTTGACCCTGTTGACAACAAGTGTCTCCTCAGAGCCACAGATGGGAAGAAGAAAATTAGTACAGTGGTAAGCACCAAAGAAGTAATAAAGTTTCAGATGATGTAG

Function

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0005786 signal recognition particle, endoplasmic reticulum targeting cellular_component
GO:0030942 endoplasmic reticulum signal peptide binding molecular_function
GO:0008312 7S RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186231 lncRNA upstream 33798 3687963 ~ 3688231 (+) True G148010
TU186210 lncRNA upstream 90574 3630582 ~ 3631455 (+) True G147994
TU186027 lncRNA upstream 426161 3216784 ~ 3295868 (+) True G147856
TU186011 lncRNA upstream 582840 3135920 ~ 3139189 (+) True G147842
TU185979 lncRNA upstream 685683 3035019 ~ 3036346 (+) True G147814
TU186258 lncRNA downstream 5695 3728325 ~ 3759003 (+) True G148036
TU186304 lncRNA downstream 153741 3876371 ~ 3879521 (+) True G148075
TU186359 lncRNA downstream 289024 4011654 ~ 4013403 (+) True G148119
TU186373 lncRNA downstream 389490 4112120 ~ 4193033 (+) False AMCG00000113
TU186372 lncRNA downstream 394123 4116753 ~ 4120114 (+) True AMCG00000113
AMCG00000089 mRNA upstream 1354 3714664 ~ 3720675 (+) True AMCG00000089
AMCG00000094 mRNA upstream 22936 3690772 ~ 3699093 (+) True AMCG00000094
AMCG00000090 mRNA upstream 41312 3647806 ~ 3680717 (+) True AMCG00000090
AMCG00000083 mRNA upstream 180873 3538688 ~ 3541156 (+) True AMCG00000083
AMCG00000082 mRNA upstream 185295 3523600 ~ 3536734 (+) True AMCG00000082
AMCG00000102 mRNA downstream 183792 3906422 ~ 3915953 (+) True AMCG00000102
AMCG00000104 mRNA downstream 205842 3928472 ~ 3940793 (+) True AMCG00000104
AMCG00000103 mRNA downstream 235011 3957641 ~ 3976423 (+) True AMCG00000103
AMCG00000109 mRNA downstream 275548 3998178 ~ 4009288 (+) True AMCG00000109
AMCG00000108 mRNA downstream 321482 4044112 ~ 4071434 (+) True AMCG00000108
TU186234 other upstream 26227 3693109 ~ 3695802 (+) False AMCG00000094
TU185878 other upstream 1318057 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 2605079 1063085 ~ 1116950 (+) True G147416
TU185369 other upstream 3223518 449652 ~ 498511 (+) True G147311
TU185240 other upstream 3475024 240502 ~ 247005 (+) True AMCG00000032
TU186262 other downstream 37549 3760179 ~ 3760624 (+) True G148040
TU186772 other downstream 1712528 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 2158393 5881023 ~ 5888027 (+) True AMCG00000166
TU187068 other downstream 2748801 6471431 ~ 6474232 (+) True AMCG00000201
TU187079 other downstream 2793877 6516507 ~ 6520822 (+) False AMCG00000198