RNA id: TU186234



Basic Information


Item Value
RNA id TU186234
length 233
RNA type TUCP
GC content 0.55
exon number 3
gene id AMCG00000094
representative False

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3690772 ~ 3699093 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GATGCAGGGTTTGCCTGCGGAGAACCTGCTGAGTGCTGGGACGAAGACAGGAGAGTTCTTTAAGAGAGACTCGGCCAACTCCCTGTGGAGACTTAAGACGCCAGAAGAGCATGAGGGAGAGACGGGGATCCAGTCAAAGGAGCAGCGGCTGTACAAGTCCAGTGGTTTGGATGGCATGGCGCTGGTCCATATGCCAATGGATCTGGATGGGAATGACTTGATGGCAGAATTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU186231 lncRNA upstream 4878 3687963 ~ 3688231 (+) True G148010
TU186210 lncRNA upstream 61654 3630582 ~ 3631455 (+) True G147994
TU186027 lncRNA upstream 397241 3216784 ~ 3295868 (+) True G147856
TU186011 lncRNA upstream 553920 3135920 ~ 3139189 (+) True G147842
TU185979 lncRNA upstream 656763 3035019 ~ 3036346 (+) True G147814
TU186258 lncRNA downstream 32523 3728325 ~ 3759003 (+) True G148036
TU186304 lncRNA downstream 180569 3876371 ~ 3879521 (+) True G148075
TU186359 lncRNA downstream 315852 4011654 ~ 4013403 (+) True G148119
TU186373 lncRNA downstream 416318 4112120 ~ 4193033 (+) False AMCG00000113
TU186372 lncRNA downstream 420951 4116753 ~ 4120114 (+) True AMCG00000113
AMCG00000090 mRNA upstream 12392 3647806 ~ 3680717 (+) True AMCG00000090
AMCG00000083 mRNA upstream 151953 3538688 ~ 3541156 (+) True AMCG00000083
AMCG00000082 mRNA upstream 156375 3523600 ~ 3536734 (+) True AMCG00000082
AMCG00000081 mRNA upstream 223145 3464363 ~ 3469964 (+) True AMCG00000081
AMCG00000079 mRNA upstream 228803 3443513 ~ 3464306 (+) True AMCG00000079
AMCG00000089 mRNA downstream 18862 3714664 ~ 3720675 (+) True AMCG00000089
AMCG00000093 mRNA downstream 26227 3722029 ~ 3722630 (+) False AMCG00000093
AMCG00000102 mRNA downstream 210620 3906422 ~ 3915953 (+) True AMCG00000102
AMCG00000104 mRNA downstream 232670 3928472 ~ 3940793 (+) True AMCG00000104
AMCG00000103 mRNA downstream 261839 3957641 ~ 3976423 (+) True AMCG00000103
TU185878 other upstream 1289137 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 2576159 1063085 ~ 1116950 (+) True G147416
TU185369 other upstream 3194598 449652 ~ 498511 (+) True G147311
TU185240 other upstream 3446104 240502 ~ 247005 (+) True AMCG00000032
TU185255 other upstream 3627820 64746 ~ 65289 (+) False AMCG00000025
TU186257 other downstream 25183 3720985 ~ 3724316 (+) True AMCG00000093
TU186262 other downstream 64377 3760179 ~ 3760624 (+) True G148040
TU186772 other downstream 1739356 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 2185221 5881023 ~ 5888027 (+) True AMCG00000166
TU187068 other downstream 2775629 6471431 ~ 6474232 (+) True AMCG00000201

Expression Profile