RNA id: TU186304


Basic Information

Item Value
RNA id TU186304
length 3078
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G148075
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3876371 ~ 3879521 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gacagtaGTCAATAATATGTTTCCCCTCTTTCTTTAATTAGAAAACACATTGACTTAACCCAGGACATTCTTTACACTCAGATGCAGCAGATacagacaggtgtgtgtgtgtgtgtgtgtgtttttgggggTATGAGACTAACGTATGGGTATGGGAATAAAGCCAATAAAGTCCATGAATTACAAAACTAGCTAGTTGCAAAGACCAGGAGTAATAACTGGTGTACAGATACTGGTAATGGACACCCATTTGCATGTGAAAATATCAACAATATCTGTCAAATTTGATCATTTGTATGCCTAACTATAAAAACCTTAAAACCCCCCACTCACAGGAATATACCATCTAGGCTATTATTCATCCATATAACAAATCTACAAATTTAGTAAAATACATCAGGTagattacatttaacaaaagtATTAGTTTTATAAATCAGAAAAATCAAAAGCCAAACATAAGAAATTACTTAATGCACAGgggaaaatacaaaaccaaaagggagatcatttgaaatgcattagaAGTTCcaggatgtatttatttcattccaTTCTGTGTAGCCAGAAATCAAGCCAAGAGAAGGGGACCAATAGGGCAAGTAATGTTACCCATGTCTCAAGACACAGaaagggaaacaataaaaagcatgaATGTGTGCCTGCTGTTCTGTGCTGTACCTCTGTTAAACATATACAAACTATATTAGTGTTGTACTTCTAGATTTTAAATTTCATGTCTGCTCACTCACTTTACCCCACCTGATTTTACAATAAAAGGGAATTCAGTTGGTGTAGATGCTGCAAACATCAGCTTCTTATGATCTTGTATGAATTAATACAGCATCCCACCAAACAAACTGCTGGCAGGGAATCAAAACAGCCATCTGAATTATCACTTTAAACTCTTATCACCCTGTGCTGGAATCACACACCTTCTGTTCATTGCACCAAATTTACATCAACACCAAATGTGAAACTGGGCTAACCTGTGGGAATCTTCATTCAATGACCAGAAGTTAACATAGTATTCTCTCTTAACCTAGAAGATGTATTCATATGTACAATATGttctgtgtattaaaaaaaaatccctccaTTTCTACAATTCCCCTTACTTGGATTTATTATAAGCATTTTTGCAAAACCagattacaattatttacaaaactatGACCGTTTCATTTCAATAGtaaagatttgtttaaaatatacatgtagaTTAAACAATTTATACACAAGTAGTAAGAAATGacaggaataataaaaaaaaaggttttattattattaaaaacaatcccACATTTCTGCTGGAAAAAATAGTAGACAAGGGAACCTTAACAGTATGGGGAGTAAGGAGTTcatatggaaaacattttgctgAAAGACAGGGATGAAAGCAGTGCAATCTGAGTGAAGCAAGCAGCTctcaattaaccaattattCTACATTTCTTCCATGATGGAGCTATacattggtttattttctttgaaggaGAAAATTATAGCTGCTGCACTGCCATCGATTCAAAGTCCCATTATTTCCtaaagagggggtggggtgtgggTGTGGATAAAACAAGTACCCTTTTATGGTGGACTGGTGAAAATATTCCAACCAACATATGCATAACAATAAAGTATACGACCAATAGTATTCACCATTCTTTACAATCTTTACTAGTTACACTAGCAAAATGTAAACTTTTCTTATTGAGTAGCACTGCAAGTGTTTATCACACCAAGCCCCAACCCTCTGGGAATCACCTACATCaacagatttagtttttcaaaatctggtatgtgtgtgtgcatatgcgTAGGTGTACAATTGTTTGGAGTATTTAGGAGCATGGGCACCTGCTGGGTATTTTGCATAATCGTGTATTTTTATGAGATTTGTGAGGgtcacattacaaaaatattaaagatgaCAAAAGACTCCATATATGTACCTACCACCCATGTGCTGGTAAGACTTTTGACATAACTTGTTAGCTGGAATGATTTTCTTggagaataagattttcttACCGACACATGCATGaccaaaaaactattttatgacAACTCTacgtgttaaaaataaaatcaactaaCTCTGTAGCACCCCTACACAtagaaaattatatacattattttttcagcaaggcacattttacaaatacaaaaaaacaacaaccttagAAGCCTCTTTGGAGTGttaaataacacttaaaaagaAACGGTAGTAATTCATAAAGCTAACTGGCAGTCATTTCAATCAAAGGTTTCTGTGTATGTAggtaaaacagcagcaacaaggATCCCAACAGATATGATATACAACATGTTCTACGGGATCTTGTATAAATGGatataagaacaaaacaaactgagaaaGAAGTGGACGACAACTCATTGTGACTGAACTGGTTTAAATGAAATCTATATACACCTACGCATCATTTGAGTTAAAAATCTGTAGTCACCAAGACATCTAAGGCATTTAcgtacaaaagcaaaaacaaaaaacaaaacccccaCGTTTGGCCGAGTTTCAATGAAGCGGTGTCAACCTGAGATCAATTGGCTTTCCTGGATTAAATGCCAAAAACCTAACAAAAATCATAGTTTAAATGTACAGACCAAATTATTTTTCCAGGTTAATCTGCTAGATCTAAGTGGGGCAATACTGCCAGATGCAAACTTTCCATGTAAACTCACATGCATCATCACAGAGGCTTGCGCTGACAAATTGTCAAGAACATCGAACGGGAGAAAATGACTTGGTCTTACTGGGGAAAAAGCAGTAAGACCAAGGCAGACCAAAAGAAAAGCAGACTCACTCCACAAATTGGGAGATCCTGCCTGAATGGGAAGTGaaaaagtctgtttgtgtgcTCCTCAGATGGGCTTGGTGGTGGAGTTGTAGACGAGGCGCTCGGTGTCTCCTGTGGTGGAGATGGTGGAGCCGTTGACCACTACACGCTGTGGTTGTCTGTTGCGCTCCTTCTTGTTTTTCAGGAAGCAATAGCCCAGAATGGCCAGGACAATTGCAATGGCAACACCTAGAAGAACAGCTATTGCAATGGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186258 lncRNA upstream 117368 3728325 ~ 3759003 (+) True G148036
TU186231 lncRNA upstream 188140 3687963 ~ 3688231 (+) True G148010
TU186210 lncRNA upstream 244916 3630582 ~ 3631455 (+) True G147994
TU186027 lncRNA upstream 580503 3216784 ~ 3295868 (+) True G147856
TU186011 lncRNA upstream 737182 3135920 ~ 3139189 (+) True G147842
TU186359 lncRNA downstream 132133 4011654 ~ 4013403 (+) True G148119
TU186373 lncRNA downstream 232599 4112120 ~ 4193033 (+) False AMCG00000113
TU186372 lncRNA downstream 237232 4116753 ~ 4120114 (+) True AMCG00000113
TU186374 lncRNA downstream 237232 4116753 ~ 4193033 (+) False AMCG00000113
TU186388 lncRNA downstream 281334 4160855 ~ 4162311 (+) True G148143
AMCG00000093 mRNA upstream 153741 3722029 ~ 3722630 (+) False AMCG00000093
AMCG00000089 mRNA upstream 155696 3714664 ~ 3720675 (+) True AMCG00000089
AMCG00000094 mRNA upstream 177278 3690772 ~ 3699093 (+) True AMCG00000094
AMCG00000090 mRNA upstream 195654 3647806 ~ 3680717 (+) True AMCG00000090
AMCG00000083 mRNA upstream 335215 3538688 ~ 3541156 (+) True AMCG00000083
AMCG00000102 mRNA downstream 26901 3906422 ~ 3915953 (+) True AMCG00000102
AMCG00000104 mRNA downstream 48951 3928472 ~ 3940793 (+) True AMCG00000104
AMCG00000103 mRNA downstream 78120 3957641 ~ 3976423 (+) True AMCG00000103
AMCG00000109 mRNA downstream 118657 3998178 ~ 4009288 (+) True AMCG00000109
AMCG00000108 mRNA downstream 164591 4044112 ~ 4071434 (+) True AMCG00000108
TU186262 other upstream 115747 3760179 ~ 3760624 (+) True G148040
TU186257 other upstream 152055 3720985 ~ 3724316 (+) True AMCG00000093
TU186234 other upstream 180569 3693109 ~ 3695802 (+) False AMCG00000094
TU185878 other upstream 1472399 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 2759421 1063085 ~ 1116950 (+) True G147416
TU186772 other downstream 1555637 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 2001502 5881023 ~ 5888027 (+) True AMCG00000166
TU187068 other downstream 2591910 6471431 ~ 6474232 (+) True AMCG00000201
TU187079 other downstream 2636986 6516507 ~ 6520822 (+) False AMCG00000198
TU187266 other downstream 3411145 7290666 ~ 7296664 (+) False AMCG00000216

Expression Profile