RNA id: TU186388


Basic Information

Item Value
RNA id TU186388
length 694
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G148143
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 4160855 ~ 4162311 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCGTTTGAAGTAAAAATCAATTTGAccgaaacattacattttctatcaCATGCTTCAATAGGTCTATGGAGATATACCAGACTTCTGCCTTTAAGACCACTGTAGACTAATTCAGACTAATTAAGATcttatcacacacacaaatgaataatttaCCATAACTGTAAACCTTTATTGTGTTTAGGCACCTACATATGGTAGAATGGGATTTTCTCTATTTTATCCTATcatttcaatcatttaaaaggTAATGCATTATAACATGCAAATTTAGGAtgagtcatttaaaaacacaaacacttgcTCACAGATTGAGACAGGCTTTGAGAGAATACAATCTGCTAAGCAAAAAAGTAAGCAGGAGTTCTTctagaaaaaaatcaaacaggTGGTtttatgaacacattttttccaTCTTGGGTGGTCTTCAAGtatctaaacaaaaaaacgcaACCAAAGAAATTGAGGATTGACGTCACGCTTATTATTCTCCAGTCATGAATCAGGGATTATTTGATCACATTTAGCTGGAAGAGCGTGGGCTCAGAAAGGCCTCAGCagagcTTCATCATGTTTGATCCCTTCAGAAGAGTCCGTTCACCTGCTCGGTTTCGGGATCCAAGTCAATATCATAAAAACATGGTCTAGTGGGCAGGCCAGGCATTGTGCTCATCTTGAGGTGAAAGAAGAGAG

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186372 lncRNA upstream 40741 4116753 ~ 4120114 (+) True AMCG00000113
TU186359 lncRNA upstream 147452 4011654 ~ 4013403 (+) True G148119
TU186304 lncRNA upstream 281334 3876371 ~ 3879521 (+) True G148075
TU186258 lncRNA upstream 401852 3728325 ~ 3759003 (+) True G148036
TU186231 lncRNA upstream 472624 3687963 ~ 3688231 (+) True G148010
TU186391 lncRNA downstream 11126 4173437 ~ 4175716 (+) True G148146
TU186462 lncRNA downstream 420000 4582311 ~ 4582551 (+) True G148200
TU186651 lncRNA downstream 926128 5088439 ~ 5161195 (+) False AMCG00000136
TU186654 lncRNA downstream 970298 5132609 ~ 5159533 (+) False AMCG00000136
TU186722 lncRNA downstream 1150567 5312878 ~ 5314953 (+) False AMCG00000145
AMCG00000114 mRNA upstream 25445 4131629 ~ 4135410 (+) True AMCG00000114
AMCG00000113 mRNA upstream 40875 4116939 ~ 4119980 (+) False AMCG00000113
AMCG00000108 mRNA upstream 89421 4044112 ~ 4071434 (+) True AMCG00000108
AMCG00000109 mRNA upstream 151567 3998178 ~ 4009288 (+) True AMCG00000109
AMCG00000103 mRNA upstream 184432 3957641 ~ 3976423 (+) True AMCG00000103
AMCG00000112 mRNA downstream 29523 4191834 ~ 4225082 (+) True AMCG00000112
AMCG00000111 mRNA downstream 81337 4243648 ~ 4280265 (+) True AMCG00000111
AMCG00000110 mRNA downstream 162198 4324509 ~ 4354247 (+) True AMCG00000110
AMCG00000121 mRNA downstream 523278 4685589 ~ 4705926 (+) True AMCG00000121
AMCG00000120 mRNA downstream 594673 4756984 ~ 4760814 (+) True AMCG00000120
TU186262 other upstream 400231 3760179 ~ 3760624 (+) True G148040
TU186257 other upstream 436539 3720985 ~ 3724316 (+) True AMCG00000093
TU186234 other upstream 465053 3693109 ~ 3695802 (+) False AMCG00000094
TU185878 other upstream 1756883 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 3043905 1063085 ~ 1116950 (+) True G147416
TU186772 other downstream 1272847 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 1718712 5881023 ~ 5888027 (+) True AMCG00000166
TU187068 other downstream 2309120 6471431 ~ 6474232 (+) True AMCG00000201
TU187079 other downstream 2354196 6516507 ~ 6520822 (+) False AMCG00000198
TU187266 other downstream 3128355 7290666 ~ 7296664 (+) False AMCG00000216

Expression Profile