AMCG00000143


Basic Information

Item Value
gene id AMCG00000143
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5463949 ~ 5470513 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000143
TGTAGGGTTTTGCAGTGACAGGAGGTGGCATTTGTTTGTGAAGACACAGAGATCCATAGTAtccaaaatttaaattaaatcaatattcgATGAGTGCAAACGGTAATTTAGCACTGAACATGGATCCCACAGAGCATGAAAATGGCTCCACTGGTAGCAACCAGATGTTGGAAGAGCTCCCTCGCCAGaAGCGAGTCACGCCCTATTGCTGTGATGCAGATGGCCAGGTGTCCAGTTCCTTCTCAGATCTGCTCTGGGACAGCCCTGTGAGCCCTACAGTCAACAAAACCAGTGGTTTTCTATTGGAACCGCTGTACAAGATGGACAGGATTGAGCAGCCGGTCGGGGACCCTCAGCTGGACCGGTCTATGTCTGATGATGAGATAGAAAACACATTGGAGACAGAAGCCTGCATGGAGATGCTCCCACATGATACGGAGGAGGACACCCAGTTGCAGGATGAGAACACTGCCCAGAGCTTCCAGCCCTTCCTGAAGGCCGCCTTGGAAGAGTGCAAGAACACTGTGACGGCACTGCACCAGACTCATAGCCTCTCTATGGAGAGAGCCAAGAGGCTGCAGCAGACTCTAGAGATGTCCGAGACAGAGAGGATGACCGCAGAGCAGCGACTCAAGGAGACCCTGGAGGAATATGAGCAGCAGTATCAAAGGGATGTTAAGAGTCTAGAAAAGAAGCTGCAGATTTGTAAAGAGCAGCACAATGACCAGCTGCTGAAGTATGAGGGTTCAATTAAATTGTATCAGGTGCAAGTCCAGTCTTTACAGAAGACACTGGAAAACTCAGAGATCATGCACCAGCAGGAGGTGCAGAAGGTGCAGGAGACACTGGAGAGCTCTCAGACCAGAGTCCAGTTCTTAGAGGAGACCTTGAGCAAGTCTATGATCAGTTATGATATGGAGATCAACAGATTGCAGGAGGCACTGGAGAGCTCTCGGACCACAATCCAGTTCTTAGAGCAGACCCTGGACAAGTCTATGATCAGTTACAATATGGAGATGAACAGATTGCAGAAAGCACTGGAGAAATCTCAGAAGAAAGTCCAAGTCCTGGAGGAGATGATAGCCATGTCCAACTTGAATCACCTGGAGGAAATGCAGAAGGCCCAGCAGAAACTGAGCATATCTGTGGAACAAACTCACCTTCACAGCCATGAAAACAACCGTGATCAGTGCATACAGCTGCACCAGGGCAGAGAAAGTGCTCAGAACCTGGACTCTGAGTTGCTGAAACGTCTCTTTGAGCTTGCTCTGCCCACTTCTGAGCATAAAGAGAAGCGTCTCCTGTCTGAGATTGAGAGCCTGAAGTCCGAGCTGAGTGACTCTGAGCGCCGGCATCAGGAGACCATGAAACGTcttcagacagacagtgaggCCACGGCGCAGGGGCTCCAGCGGGCCCTCAAGGATTGTCAAAACGACCTCGGCTGGAAAATGAATAGGCTTATGCAGGCTTTGCAGTCGTCCATGCAAGAGCACAAGGACGAGGTGCTCGGCTTGCAGAATACACTAGAGGGCACCCAGGAGCAAACCCGGGTTTTACAGCAGACCCTAGACGTGTCCCTGATGGAGCACAGGCACGAGCTGAAGAAGATGCAGGAGGCGCTGACCCGGAATGAGCGCCAGGTTGCTGAGCAGGCCCAACAGCTGCAGAGCCACGTTGTCACCATGGAAGCCAGACTTCTAGAAGAGAAATCCAAGTCTATTGAAGAGCTGAGAAAGGCTGTCGAAGCACAGCGGCAGGAGGATATGAGAAACATGAGATCCATGCTGATGGACCAGAGAGAGGAGGCCCTGGAGCAGAAAGCGCTGCAGCAGTCACTGCTGTCACTGGACACAGAGCGGCACCACAGAGCCAGGCTGAGGACTGAGTTCCTGGAGCTGAAAACCAGCCTGTGTTCCCTGACAGAGAGCTACAGAAAGGAGGAGGACCTGAGGAAGCTGCAGGAAAAAACACAGGACTGGGAGGGAAAGGCAGCGAAACTGATGGAAAGCCTCTGTACTGTGGAGAGTTGTCAGGTCTTGGAAAGAGCAGGCAGTGAGAGCGGGGGGTCTGCAGAGACCCCTGTTTCAACAATGAGCTACTCCCCTCCTACTAAAGACACCACAGCATACCACAGAGACCCCCTCCCTCACTCACTGAAGTCTCATCACAGatCTCAAACCAGCCCAGACAGTGAGGCATCAACAGATGAGTACATTCGGTATTTAGTGATTCGCCAACAAAGACTGCAGCGTCTGCAGACAGAAAGTTTTCAGAAAGACTACAAACACTACATGGAGGTGGCCGATCGGAAAGGAAATGGATCACAGAATTCTGCAGATCCCAGTGACAGATTTTCGTTTAACACTTTAGattgatattttcttttctatgtatttagtgaaattaaaagtaaattcaGCTATAAAGTTGTAAAATCCCCTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000143 True 2447 mRNA 0.50 11 5463949 5470513

Neighbor

gene id symbol gene type direction distance location
AMCG00000141 NA coding upstream 68176 5390325 ~ 5395773 (+)
AMCG00000147 cdca4,LOC106599634,LOC106610950 coding upstream 83790 5375615 ~ 5380159 (+)
AMCG00000152 NA coding upstream 90612 5340902 ~ 5373337 (+)
AMCG00000148 NA coding upstream 134916 5320345 ~ 5329033 (+)
AMCG00000139 itpk1,LOC106597151 coding upstream 226662 5207350 ~ 5237287 (+)
AMCG00000155 ttc9 coding downstream 62097 5532610 ~ 5535596 (+)
AMCG00000170 NA coding downstream 364973 5835486 ~ 5844974 (+)
AMCG00000164 desi2,LOC103144802,LOC108232058,LOC105890990,LOC103381363,LOC103458308 coding downstream 399725 5870238 ~ 5874652 (+)
AMCG00000165 NA coding downstream 468952 5939465 ~ 5967106 (+)
AMCG00000173 NA coding downstream 514046 5984559 ~ 5993668 (+)
G148402 NA non-coding upstream 75135 5382568 ~ 5388814 (+)
G148396 NA non-coding upstream 109764 5353951 ~ 5354185 (+)
G148200 NA non-coding upstream 881398 4582311 ~ 4582551 (+)
G148146 mthfd1,LOC106952296,LOC105908326,LOC103136077 non-coding upstream 1288233 4173437 ~ 4175716 (+)
G148143 NA non-coding upstream 1301638 4160855 ~ 4162311 (+)
G148452 NA non-coding downstream 70166 5540679 ~ 5544478 (+)
G148459 NA non-coding downstream 207470 5677983 ~ 5678620 (+)
G148468 actn1,LOC100696265,LOC101469024,LOC106600942 non-coding downstream 245080 5715593 ~ 5719481 (+)
G148519 NA non-coding downstream 381132 5851645 ~ 6045324 (+)
G148545 chp1 non-coding downstream 547530 6018043 ~ 6029777 (+)
AMCG00000142 NA other upstream 9743 5435158 ~ 5454206 (+)
AMCG00000146 NA other upstream 123399 5334513 ~ 5340550 (+)
AMCG00000145 NA other upstream 148996 5307190 ~ 5314953 (+)
AMCG00000136 btbd7 other upstream 302754 5088439 ~ 5161195 (+)
AMCG00000113 NA other upstream 1270916 4112120 ~ 4193033 (+)
AMCG00000166 srsf5,LOC106602985,LOC106611464 other downstream 410510 5881023 ~ 5888027 (+)
AMCG00000175 NA other downstream 530398 6000911 ~ 6011397 (+)
AMCG00000201 NA other downstream 998832 6469345 ~ 6474232 (+)
AMCG00000198 LOC106586563 other downstream 1030380 6500893 ~ 6520863 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other downstream 1820153 7290666 ~ 7296965 (+)

Expression


Co-expression Network