AMCG00000165


Basic Information

Item Value
gene id AMCG00000165
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5939465 ~ 5967106 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000165
ATGGACAGAGGGGTGAAAGGATGTGCATCTTGTCTCCCCAGGCTGTGCAGTCTGACCTTGAAGAAGCTGGTGGTGATGAAAGAGCTGGACAAGGAACTCATCTCCGTGGTCATCGCAGTCAAGATCCAGGGCTCCAAGCGAATCCTGAGGTCTCATGAGATCGTACTGCCGCCTAGTGGTGTAGAGACTGACCTGGCCCTGACTTTCTCACTGCAGTACCCTCATTTCCTGAAGCGCGAGGGGAACAAACTTCAGATTATGCTGCAGAGACGGAAGAGGTACAAGAACCGGACCATCCTGGGCTACAAGACGCTGGCTCTGGGCTCCATCAACATGGCTGAGGTGATGCAGCATCCTACTGAAGGGGGCCAAGTGCTCCCTCTCTGCAGCAACCTGAAGGACACTGCCGCCAAGGTGGCTGAGATATGGATCTTCTCTCTGTCCAGCCAGCCCATCGACCATGAGGATGGGGCCCTGCAGGGTGGACAGAAGATCAAGTCTACAGaCAATTATTCAGAGGAAGAGTACGAGAGCTTCTCCTCGGAGCAGGAAGCCAGTGACGACGCTGTGCAGGGCCAGGATCTCGATGATGAGGAGTATGACGTGAGGAAGCCCAAGAAACAGAGAAGATCCATCGTGAGGACCACTTCCATCACCAGGcaacaAAACTTCAAACAGCGTGTGGTAGCTCTCCTGAAGAGGTTCCGAGTCTCGGATGAGGTGCTGGACTCGGAGCAAGATCCCGCTGAGCCCCCGCCCGAGGTGGAGGAGGACCTAGACTTGGAGAGTCTGGAGTTTGAGAACCCCAGCGACAGCGCCCCGGAGCTGGATGACGACGACAGCGTACTCAGCACTCCCAAACCCAAACTCAAGCCTTACTTCGAGGGGCTCTCCCACTCCAGCTCGCAGACCGAGATCGGCAGCATTCACAGCATGCGCAGCCATCGCGAGCCACCCAGCCCGATTGACGCTCCAGACAAAGCCAAGACACCGGGGGGCAAGTTCCAGGTGGACGACGTGTCAGACACTGTCTCCTTTGTAAGTGTCGACAATTGGCAAGAGGGTAAGCTAGCAGGGCGGCGAGGCAGAAGCACATCCCTCAAAGAGAGGCAGCCAATCAGACAGCAGAATGAACGAGCCAACAGTCTGGACAATGAGCGCTCTCCTGACACCAGGTGCCACCTACAGATCCCTCGGAAGACTGTCTATGACCAGCTGAACCACATCCTTGTGTCAGACGACCAGCTTCCTGACAGCATCATCCTCATCAACACGTCTGACTGGCAGGGACAGATTGTGAGTGCCGGCCTCCAGCCCAGGCCCCTCCCGGAGGGGTCAAAGGTCACCAGCCTGGCTCCTTACTGTAATTGCAACTCTCAGACTCCCATCCCCATCAAAATTGCTGTGGCTGGAGCCCAACATTACCTCAGCGCTGTTCTGCGGCTCTTCGTGGACCACCTCACCCACAAGACCCCTGACTGGCTTGGGTACATGAGGTTCCTGGTCATACCCTTAGGTTCCCACCCTGTGTCAAAATACCTGGGCACCATTGACTACCGCTATAACAGCCTGTTCCAGGACGCAGCCTGGAGGGATCTCTTCCACAAACCAGAGGCCCCTGTTGTAGTGCAGGAGGGTCTGGACTTGGTCTCCAGGGTCACTCAGTACATGGTCGGGGCCAATGGAGCCCACCAGCTGCCCATTGCGGAAGCCATGCTGACCTACAAACAGAAGAGGAGGTTCATGAGACTCTCCCTAACCTCACTGTCCACCCCTTCAGACCATGTTGTCAAAGTGGGGATAGTGGAACAGTCCTCTGCCACATCAGgagacTCTGATGATGCTACTCCTGTGTCAGGCATGctctcctccacccccccacaggTGTCACCCGCCCTCAAAGAAGCCTCCCCTACacccccttcctctccctctgtcaaCGCCAGCTTCAGCTCCTACAGTTCTCCAGGGGCAGCACAGGGGGAACTTATGGGCCTGCAAGTGGATTACTGGGTGTCCCCcttggagagaaagagggacgTGGAGAAGAGAGACTCTTCCTCTAAGAACACCTTGAAGTGCACGTTCCGCTCCCTGCAGGTCAGCCGACTGCCCCTGCCAGGCTCGGACTGCCACCCCCAGCCCACCATGGCCATGACTGTGGTCACCAAGGAGAAGAATAAGAAAGTGCTGATAGACGGAGTAGAGTGGAACGACGTTAAGTTTTTCCAGCTGGCTGCCCAGTGGTCGTCTCATGTCAAGCACCTTCCCATCGGCATCTTTGGACACTCGAAAACACCATACTAGCACCCCCTGGAGGGCTCCTCATAGAACTGCAGAACGTCCACTGCGTGCCAAGAGCCTCCTCCCCCACCCGTCAGCAGGCCACCCTTAACCTACCACCCTCCTTCATTTCAGTTGCTTTCTTTGATTTTGtcattgtctttaaaaaaaaaaaaaaagcctttggCAAAGAGACTTTAAGAAAGCAAGGCCAGTGAAGGGAagatagtttttgtttttggtttgtttcaacCATTCTCTTCTGACTTTTTATAAACTTTGAGGGGagggtagaaaaacaaaaaacaaacctaatCGAATAATCATTTGAAATGATGTATTTAACTCCCTAACATTGATGGTACAATACAGTGAGCATAAGGCTCTGGGCTCCGTTCAGCTTTGTTACCAGTGAAATATTAGTTTCAATCACTTCACTGCGTGGTTAACAACATTAAAACTccttttgggggggggggtggattctgtattaatgtttgtaACTGAATGGCTTTTCAGGATGCACTGCTGCCCGAACAGCGAAACGCCAGGAAGAATTGACCCAGTCTTTCCGCCTATGGGGTCAAAGAAGTTGGAAAAGAGTAGACGTATTTGTGATGGCGAATTCTGGACCCTCTCATGCCCCTGATTTAGAGTCAGGTATTCCCCTGCGATCAGCCCACCAGATTTCCACAGGATCAAAACTCCACTGAGACCCACCGAGCTTGTCTGAAGAAGATTATAATTTGTgcaataaactgtaaataaatgaagaagcTCCTGAATGATCTGACAAGCCCTGAATTGCACACCGAAGCCCTctcttctctttccctctccttctctgtttctctccctgtTGTTCTCACTCTCAAGGAGTGAGACAGGCTAATGATGGAGAATAGCGATATCAGGGATCTCCACAGCCTTCTCCTCAAAGTTTGGAAAGAAAGTATGTTTTTGCGCCCACAACCTCACCCAGACACCGAAGCACCTGTTGCAAAGACACTGGCAACACATATTTTGACCTCCGCAggcccaaaacacacacacatacacaaactcaatttattttattcaacacaTTGCAAGTATATTGACCAATGGTAAAAAAGGACTgtgttgattacatttttaagattagAAAGTCTCAAAACTTGTTTTTTGCCTTTGCATGTTCAAAAAGGTCACTGGAGATCCCTGCTTTGTTAAAACGTTTTCTTTGTTCAGTCACTAGCACTGTagactgttttttattattattattatttatttatttttgtccgtTTACTGTTTGCAGTTACGGTTTGACTAAAAAATAACGATACAAACATCTTCAAAGCCTTTCTTGCCAGCAATGATATTACtagaatggaatggaatgaaaCTGAAGATCTTGTGGTTATGAGCTGATTGCTATGGATTTGCACAAGTGTTTGATCTTGAGGCAGAAACAAAATAGCCGGAGACTGGAGCCACCCACCCTCGAACCCCACAGAATGGTGAGACCACTATCACACATCCAGATGCCCTGATTGGCTGGGACTCCCTGTTCTCCACTCTGATTGGAGCAGAATGGTGACAGCATGGGGTCGGGTAGAGTCACAATGGGCCTCCTATTCTTATCACAATCTGTCGTTGGGAACTGTGTGTGTCCTGTAACAGGGACCGAAGTTCACATTACGCAGTGTGAAAAGAGGCACCCAATTTGCTCTCAAAGGGTTTATTTGTGCCTGTCCAGCCCCAGTCCAGATAGTTTCAAATGTAACCCTTAATCAGTGCTTTCTAAAGACTAATAACACATGTTAGTTCTTAAACTAGCTAAGCTAGTTCCCTGTTAAGGGAAGTGTGGTCTTTGAGGGGCCTTTACAGGATATTTTACTGTTTGGTTTTTTAATAGGCACCTATAAACCCTGTTAGATTGGGACTTAGCAGCACCAGGTTTGGAAACCCTTGTGCTATATAATGCTGTAATCAGCCCCTAGGCCTTCTAATCCAGTCCAAAATGTTTGGCACAGTCAGCACCTTATGTCATTGAGGGAATAATCCACTAACCAAACCGTTTGAAGAAGTGGTAATGCCACAGTCCTGGAATGGAACAGCTTGAAAGGTGAGGTTATTTGCCTAACCTAGAAAAGGTTATTTAACTAACGCACCCAGATACAccgcccccccagccccaccaCCTCACCATTTAGAATTTCTCATTGCAGAAGGTGGGCAACCTTAAGACTCATCTGCCACTTGTGTCCCTTTAGCTCCTATCTGAGTGCTTCTCCTCCGGCAGTGACTATTCATGAGTTGCAGAGAGGGGGACCTGCGGGGGACTAAATTACTGACCTAACCTCTAGGCTAACGATGGTCAAGGAGAATGGCTTGTTACCAGGAGACTGCCATTGACTTGCGTGTCACCCTGGCAATGTCACCAAACCCCCTTCAGATGAGATGTAAACCTGCAGCAGTGTCGGCACACCTCCACCCTAATGGCTCTGTTTGTCACGTTGGATAAAAAGACTGACTATCGTACTGAAGTTGGAGATGACTCTGCCTTCCGTGTTCCTTCCTCTGTTTAAATCTAAGACCTTTCAATTTGAATTCATTTTCCAATCACAAGATCCACAGTGTCCAAGGACCCCCATCTCCCTCCCCTGTGTAATAAACTTCACTTTATTTGGGTTGTTAATTCCTGTACTCCACTCTTCGAACACCAAGGTCtaccacaatacattttcacaaggATACGGACTACATGGACTGCATGTCTTATGCCAAGAGAGCTCTTTGCGTTTGTCCCCTCTTGGTTCCAATAGTGTGTTGAGCATTTCAAGGGAAGTAATAATGCAGCACAGTGATGATGCTACACTAATAGCCCCACATTTGTAGACTGGCTTTCTAGTCATCATCCCAGCTCATTATTACCCAACTGAACTCACAGAGGCCTTAACCAGACCAGTAGGACCACACATCCCTATAACTGAAGCATCTTGTGATGCTGTGAGGCCTgcaaacatatttaatacagaCTGGCGTAGACAACAGCTGAGACAATACAGCCGCATGTGCATTAAGTGTCGATCTTGTGGCCGGGTACAAATCAGGCACACGGTTTCAATTCTCGCCCTCCTACACCAATTCTGGTCTGTGTGTAGGGCCTCAAAGTTGGTTACCAGTATTCCAAGGCCACTAAATAACTGGGTTAAATTGATATTGGTGTTCGATAGTGGAGatccctcccgctgctgccccATTTTCCAACCTGCACTATTTCaaacttcaaatgtttttctttcacaccGTTTTAGTCTCCAGGCTCTGTACAGTTTGTGAGTGACCCCACCcctcaaaggaaaacaaaggcaTTACTCAACTTTGAGGGGGTGGGTCCATTGTGTATTTTGCCCACAGgtacccacccccaccccctggaTGCCAAATTGTGTATCTAGAGTACTATACTGAAGATACTGTAACATGAACAAATGTGCTTTTTCCCAGGAATGGGTGGGTCCTGAGAAAAAAA

Function

GO: NA

KEGG:

id description
K23294 PACS2; phosphofurin acidic cluster sorting protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000165 True 5803 mRNA 0.49 21 5939465 5967106

Neighbor

gene id symbol gene type direction distance location
AMCG00000164 desi2,LOC103144802,LOC108232058,LOC105890990,LOC103381363,LOC103458308 coding upstream 64813 5870238 ~ 5874652 (+)
AMCG00000170 NA coding upstream 94491 5835486 ~ 5844974 (+)
AMCG00000155 ttc9 coding upstream 403869 5532610 ~ 5535596 (+)
AMCG00000143 NA coding upstream 468952 5463949 ~ 5470513 (+)
AMCG00000141 NA coding upstream 543692 5390325 ~ 5395773 (+)
AMCG00000173 NA coding downstream 17453 5984559 ~ 5993668 (+)
AMCG00000174 NA coding downstream 64183 6031289 ~ 6034264 (+)
AMCG00000186 dnajc17 coding downstream 131387 6098493 ~ 6109137 (+)
AMCG00000185 NA coding downstream 190688 6157794 ~ 6170088 (+)
AMCG00000183 NA coding downstream 312442 6279548 ~ 6283057 (+)
G148468 actn1,LOC100696265,LOC101469024,LOC106600942 non-coding upstream 219984 5715593 ~ 5719481 (+)
G148459 NA non-coding upstream 260845 5677983 ~ 5678620 (+)
G148452 NA non-coding upstream 394987 5540679 ~ 5544478 (+)
G148402 NA non-coding upstream 550651 5382568 ~ 5388814 (+)
G148396 NA non-coding upstream 585280 5353951 ~ 5354185 (+)
G148545 chp1 non-coding downstream 50937 6018043 ~ 6029777 (+)
G148609 NA non-coding downstream 180816 6147922 ~ 6148285 (+)
G148618 LOC107745367 non-coding downstream 240247 6207353 ~ 6214760 (+)
G148631 cyp1c1,cyp1c2,cyp1c3,LOC106610849 non-coding downstream 248650 6215756 ~ 6216459 (+)
G148656 NA non-coding downstream 339522 6306628 ~ 6306867 (+)
AMCG00000166 srsf5,LOC106602985,LOC106611464 other upstream 51438 5881023 ~ 5888027 (+)
AMCG00000142 NA other upstream 485259 5435158 ~ 5454206 (+)
AMCG00000146 NA other upstream 598915 5334513 ~ 5340550 (+)
AMCG00000145 NA other upstream 624512 5307190 ~ 5314953 (+)
AMCG00000136 btbd7 other upstream 778270 5088439 ~ 5161195 (+)
AMCG00000175 NA other downstream 33805 6000911 ~ 6011397 (+)
AMCG00000201 NA other downstream 502239 6469345 ~ 6474232 (+)
AMCG00000198 LOC106586563 other downstream 533787 6500893 ~ 6520863 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other downstream 1323560 7290666 ~ 7296965 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other downstream 1346766 7313872 ~ 7324451 (+)

Expression


Co-expression Network