AMCG00000173


Basic Information

Item Value
gene id AMCG00000173
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5984559 ~ 5993668 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000173
GGGCTACGTTCGACCCGCGAACGTCATTCGCTCACTATTAGAAGCttgagaataagaaaataatagtgCATTCTGCTTTATTATCTAAATCACAGATTATACATGAATGGAGATTTCGCCTGTGATTTTTTTGAGTTTTAGAATCGAACACAAATGTGTGGTTAAAAATGAAGgtcaaacatatatttttaaaacgtCTAAACTGAAAATTACTAATGTCTTACAGTAACGTATGTTTCTGGGGCTGTATTTTGATACAAGATTACCTTTGATGTGCTATAGTGGTGTATTTTCTGTGAAGTCTTGATGTTTACcggcttgttttgtttattgtattctcAATTCAACTGTAGCATACAAAGAGCATGACAGTAATcgcatttttgtaattaaaagcaaaaattgaattatatttCCAGTTGCCTTTTCCTTAAGGAACACATTTGTTTGGGACTCTCCAGCACAGTTAATCATGTTTATTCATCTAAGGTGTTGTACATAAGTCGTATAATAACATTGGATCTATATCCCAGATGATTGAGTGCGTGTATAACAGGCTCCTGGAACGAAAGGTAACCGGGGTGTCGTTTTCCTGGGAGGACATATTATCAGGACGGACCACTGTAAGTGAGTTACACAGTTAGTGCTTGAAGGTCTtctatgtaatatatttaatattggtACAGTGTCTTCGTATACGTTTTTGTTTTGCGGCCTATTCAAAAgttttttctattaatttatttattctgattatttattattttatcagtttCAGCTGCCTGCCAATACTTTGGAATGGGATGCCTGTCACCTTCATACATGCtcgatttaatttattttcactatCGTTCAGGTCTAACATACTGATTTAAGTGCTGCCAGAGAGCCTAGGTTCGGGGGAAGATGGCTTCAGGAATAGCCAGATCGCTGGGTGTACAGTACGGATCCAACTTCCTAAACGGCTGGCTGGTGCCTCGGTGTTGCAGGGTGATATCTGCACGAGGGTCAGCCGGGACTTACCGCAGGCCCGGCGTACCTCGTGACAACACGCCGCCATGGAAGAAGATCCACTTCAGCTTCTCCAAGGGGTTGCAGGGCGTGAAGAAGCACTTTGGCCTGCTGAAGCAGGAGGTTGTTGATCGATTTGTGGGGCCGGAGGGGAAGCCCCTGGAGACACACATGCTGGAGCAGACCAGGGTACTGTGGGAGTTTAGGAGCCCCGAGAACCTAGACCAGTGGGTAGTGTCCTCGGATCAGGAGATCGGAGGCAAAAGCGAGGCCTATTTGAAGCTGGGGAGAAACCGCCAAACCTGCCTGCTGTACGGGACTCTGTGCTCAGTACCCCCCAAGGACGGTGAGACACGTTACAGTGGGTACTGCACCCTGCGCTCAAAACAGCCACTGATGTCCTTTGACCGGAAGAAGCACCATGACTGGTCAAGCTTTAACTCCCTGTACCTACGTATTCGTGGCGACGGGCGACCGTGGATGATAAACATCGGGGTTGAGACTTTCTTCTCCCACCAGAGAGATACCATTTACAACTACTTCCTGTTCACTCGGGGTGGACCCTATTGGCAAGATGTCAAGATTCCTTTTTCTAAGTTCTTCCTCTCCAGCCGGGGAAGAATACAAGATGACCAGCATCCGATTTGGTTAGACAAGATCAACACACTAGGGTTTACTCTGGGTGATAAGGCAGACGGACCGTTTCAACTGGAGATTGACTATATAGCTGTATGTAACGATCGTGCACATACAGAAGAGTTTGCCTATGAGACGTACAAGAGGAATCCAGAAGTTTGACGAGCAATGCACATGATTACAGCACATCCTCCAATTTTTGTCCATTATCCTCACTATTGTTTATATAGGTAGCAGGCAGCTGAAAACAACGTTGGAAATTCAGCATCTCTTACTTcaattttcagatttgtaataGTTTTACAGAAAGATCTTATGGTACTCAGAGGTTCACAGGCTTATATGGGTAGTATTTGTaggcatacatttttaaaaagtctgaaaacaatttaatgtaGTGTGAAATGCCAAacaaagcatatttattttttttaaacaagttttgattaaaaaaatacaaatacaaaagagatctaattaaatgcagtacacttttttttctattaacattaaggagaaaaacaataccatacagtatgtaaaatgtacttGATAAACTGCaatcaataaaaagaaaacatcctgataacacaggcaagtacagacAGAAATAAACTACAAGGCTGAAATGACAGGtaatatttacaaaactaaaaaacatgacTTTGTTTTTAGTTCATAACGAGGCCTCGTCTGGCTCCAAGCAGTTTCTCTTTCTTCTGCTTCCTGTCTTCGGTGTGCTTGGTGCGCCTCACTTCcctagaaataaaaatatggaaaaataattagtttGTATAGATAGGGCTAGATCAAGATTGCTCAACAGGGCttcactatttgtttttattatggttcttaataaacaaacatgtgtCTTTATtgttcaaaatgaatgaaatcatCATCTCACTGGTGAACTATGGATATGGTCAATATCATGCACTAAATACCATAGAAACCTTTCCCTTTGTATATAGGTATGCTGAAATAAGTTACTATTTAatctaaagaaaaatacatttacacttcAGTAGGAAAATACACTTGTTATCCAACccataaaaaaatcaattccacaatgtaatattttcttgaATTAGTACTCTTGAAATATCACTCTAGCCGGTCTCATCTCTACTAAAGCCTACACAAATTCAAAATCTTGACCTTAAACTCCAACTCACCTCGTCTGAACTTTATgttgtttgtagtttgtttggTGCGAGGAAGTTGTCTGGGATTTGTTCAAAGCTTCATTTTCTTGAGTCGATCCGAATGGCTTCAGTTTCCCTTTACAAACCAAACCAATGACATTATGAAGTGCCGTTTTGCAGATGAATACCTTTTCTTCTGACAGAATGTGAATGATATGTACACATTGATCCAGATTTGTTCACTAGAGTCAATCTTTGTGCAGTGCTTATGACAACTGCCTGAATTTACTCCTCTCGCATCAATTGTGTGTAGGATGCTAACAActtgtggattttatttttggcttCTTGTTGATACTCACTTTTATAATGAAACACTTTTGATGGAATTTAaactatacaaatgtattatacacaattatttGATTTCAATCTAATTAAACCCATTTACAAAATTAGAGAAAGATGCCATGAGCATAAATGCAATCTATTTAGTGCTGCCTCATTGATTGGATAAATGTGAATGAATGCCTATTACATTCCTAGACATGAACAGACTATGTGCTCAAGGTGGAGCAGTGGTGAACACTTGTAAGATGTCATGGTACTGATAGGCATGTTGCAATTAAATACGTTGCTACAGGGAAAGCACCTGTAAAATTCTAGTGTTTTGGAGCCCTAGCACCTTACCTTTGTGTGGCTGGTAGCCAAGC

Function

GO: NA

KEGG:

id description
K18159 NDUFAF1, CIA30; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000173 True 3514 mRNA 0.39 5 5984559 5993668

Neighbor

gene id symbol gene type direction distance location
AMCG00000165 NA coding upstream 17453 5939465 ~ 5967106 (+)
AMCG00000164 desi2,LOC103144802,LOC108232058,LOC105890990,LOC103381363,LOC103458308 coding upstream 109907 5870238 ~ 5874652 (+)
AMCG00000170 NA coding upstream 139585 5835486 ~ 5844974 (+)
AMCG00000155 ttc9 coding upstream 448963 5532610 ~ 5535596 (+)
AMCG00000143 NA coding upstream 514046 5463949 ~ 5470513 (+)
AMCG00000174 NA coding downstream 37621 6031289 ~ 6034264 (+)
AMCG00000186 dnajc17 coding downstream 104825 6098493 ~ 6109137 (+)
AMCG00000185 NA coding downstream 164126 6157794 ~ 6170088 (+)
AMCG00000183 NA coding downstream 285880 6279548 ~ 6283057 (+)
AMCG00000181 NA coding downstream 363460 6357128 ~ 6364974 (+)
G148468 actn1,LOC100696265,LOC101469024,LOC106600942 non-coding upstream 265078 5715593 ~ 5719481 (+)
G148459 NA non-coding upstream 305939 5677983 ~ 5678620 (+)
G148452 NA non-coding upstream 440081 5540679 ~ 5544478 (+)
G148402 NA non-coding upstream 595745 5382568 ~ 5388814 (+)
G148396 NA non-coding upstream 630374 5353951 ~ 5354185 (+)
G148545 chp1 non-coding downstream 24375 6018043 ~ 6029777 (+)
G148609 NA non-coding downstream 154254 6147922 ~ 6148285 (+)
G148618 LOC107745367 non-coding downstream 213685 6207353 ~ 6214760 (+)
G148631 cyp1c1,cyp1c2,cyp1c3,LOC106610849 non-coding downstream 222088 6215756 ~ 6216459 (+)
G148656 NA non-coding downstream 312960 6306628 ~ 6306867 (+)
AMCG00000166 srsf5,LOC106602985,LOC106611464 other upstream 96532 5881023 ~ 5888027 (+)
AMCG00000142 NA other upstream 530353 5435158 ~ 5454206 (+)
AMCG00000146 NA other upstream 644009 5334513 ~ 5340550 (+)
AMCG00000145 NA other upstream 669606 5307190 ~ 5314953 (+)
AMCG00000136 btbd7 other upstream 823364 5088439 ~ 5161195 (+)
AMCG00000175 NA other downstream 7243 6000911 ~ 6011397 (+)
AMCG00000201 NA other downstream 475677 6469345 ~ 6474232 (+)
AMCG00000198 LOC106586563 other downstream 507225 6500893 ~ 6520863 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other downstream 1296998 7290666 ~ 7296965 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other downstream 1320204 7313872 ~ 7324451 (+)

Expression


Co-expression Network