AMCG00002269 (kif1b)


Basic Information

Item Value
gene id AMCG00002269
gene name kif1b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9661508 ~ 9692975 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002269
ATGACAGGAGCTCTGGAGATAATATATGCCAGCCTGTCCCATTGGAAAGAGAGCTTTGATCCTGGGAGAACAAATGGGCCCTCTTCTGGGGCTGGGGGTAGGGTGTACGAGAGCAAGCTGCAGGCACTGCAGAAGCAGGTGGAGACGCGCTCGCTGGCGGCAGAGACacccgaggaggaggaggaggaagaggaggaagTGCCCTGGACTCAGCATGAGTTTGAACTGGCACAGTGGGCCTTCAGGAAATGGAAATATCACCAGTTCACATCGCTGAGGGACCAGCTGTGGGGCAACGCTGTATATCTGAaggaggccaatgccatcagtgTGGAACTGAAGAAGAAGGTGCAGTTTCAGTTCGTGCTGCTCACAGACACCCTATACTCCCCCCTGCCCCCCGAACTGCTGCCCCCAGAGCCAGAGAAGGAAAGGGACACACGGCCGTTCCCCCGCACAGTGGTGGCTGTAGAGGTGCAGGACCTTAAAAATGGGGCCACACACTACTGGTCCCTGGAGAAGCTCAAACAAAGGCTGGACCAGATGCGCGAGATGTATGACCGGGCAGGAGAGATGGCCTCATCCAATCAGGAGGATAATGACAGCGCCCTGACTGGGAGTGACCCCTTCTATGACCGCTTCCACTGGTTCAAACTCGTGGGCAGTTCCCCCATATTCCACGGCTGTGTGAACGAGCGCCTGGCAGACCGCACGCCCTCGCCCACCTTCTCCACGGCCGACTCTGACATCACGGAGCTGGCGGACGAGCAGCAGGATGAGATGGAAGACTTTGACGACGAGGCCTTTGTAGATGACACGGGCTCTGACGCCGGCACGGAAGAGGGCTCGGACATCTGCGGCGACGGCCAAGACCCCTTCTACGACCGTTCCCCCTGGTTCATTTTAGTGGGCAGGGCCTTTGTGTACCTGAGCAACCTGCTGTATCCAGTGCCGTTGGTCCACAGAGTTGCCATAGTGACGGAGAAAGGGGATGTGCGTGGTTTCCTCCGGGTCGGGGTACAGGCCATCGCAGCTGATGAGGAAGCCCCAGACTACGGATCAGGGGTGAGACAGTCAGGCACAGCGAAAATCTCCTTTGATGACGAGTACTTCAAAACAAGCGATTTCTCCACAGCCGCCATGACTCGCTCTGGGCTCTCACTAGAGGAGCTGCGCATTGTGGAAGGTCAAGGTCAAAGTACAGAGGTCATAACACCTTCAGAAGAAATCAACAGAATGAATGAAATGAATTTAAAGCTACCCAACATGGACACCAAGCTGGGTGTGGAGGGCCTGTCGGAGGGGCTGGAGGTGGGCAGCATCTTCACCTTCCGTGTGACAGTCCTGCAGGCCAGCAGCATCCTGCCTGAGTATGCGGACATCTTCTGCCAGTTCAACTTCCTCCACCGTCACGATGAAGCATTCTCCACAGAGCCCTTGAAGAACACAGGACGAGGGTCCCCTCTGGGATTCTATCACGTACAGAACATTGCCGTGGAGGTGACCGAGTCATTCATAGAGTACATTAAGACCAAGCCGATAGTGTTTGAGGTGTTTGGACACTATCAGCAGCACCCCCTACATCTGCAGGGACAGGACCTCAACAGTCCTCTAACACCATCTCGGAAGTACTTTCCTCCCCCTATGCCGCTGTCAAAGCCAGTCCCAGCCACGAAGCTGAATGCCATCAGCAAGCCCAACCTTGGCCAGTGTGTGAGCAAGTATGACCTGCTGGTGTGGTTTGAGATCAGCGAACTGGAGCCCACAGGAGAGTATATCCCGGCTGTGGTGGATCACACAGGAGGCCTGCCCTGCCACGGCACCTACCTTCTGCACCAGGGCATTCAGAGGAGGATCACAGTCACCATCATTCACGAGAAGGGCAGCGAGCTGCACTGGAAGGACGTGAGAGAGCTGGTGGTCGGTCGCATCAGGAACAAACCAGAAGTGGATGATGCTGCTGCAGATGCAGTTTTGTCTCTGAATATTATTTCagccaaaaatataaaatcatccCACAATTCCAACAGGACGTTCTACCGCTTTGAAGCTGTGTGGGACAGCTCCCTACACAACTCCCTCCTCCTGAACCGCGTTACTCCATACGGCGAGAAGATTTACATGACTCTGTCTGCGTACCTGGAGCTGGACCACTGCATCCAGCCCGCCATCATCACCAAAGACGTCTGCATGGTCTTCTATTCACGAGACGCTAAGATTTCGCCCCCGCGCTCGCTCAGGAACCTATTTGGCAGTGGCTACTCAAAATCTCCTGACTGTAACCGAGTGACAGGGATCTATGAGCTGAGCTTGTGCAAAATGGCTGACACAGGAAGTCCAGGCatgcagaggaggaggaggaaggtgCTGGACACATCGGTGGCCTATGTCAGGGGTGAGGAGAACCTCGCCGGCTGGCGGCCTCGCGGGGACAGCCTGATCCTGGAGCACCAGTGGGAGCTGGAGAAACTGGAGCTGCTGCACGAGGTGGAGAAGACGCGacatctgctgctgctgcgggaGAAGCTGGGCGAGACAGTCCCCAAATCCCTGTGCGAGTCCGTCTCCCCCAGCATGAGTAGTGGCACCCTCAGCACCTCCACCAGCATCTCCTCACAGATCTCCAGCACCACTTTCGAGAGCGCCATCACACCCAGCGAGAGCAGCGGCTACGACTCTGCCGATATCGAGAGCCTGGTCGACCGTGAGAAGGAGCTCGCCACTAAGTGCCTGCGACTTCTGACTCACACATTCAACAGAGAGTACAACCAGGTCTGCAACAGCATTAGCGACTGCAAGCTCTCCGACATCTCTCCCATCGGCAGAGACCCTTCAGTGTCCAGCTTCAGCAGTGCCACCCTCACGCCATCCTCCACCTGCCCCTCCCTCGCCGACTCCAGGTGCAGCTCCATTGATCAGAAgaccCCAGAGGCCAACTCCCGGGCCTCCAGCCCCTCCTGCCCGGACTATGAGAACTTCCCTATGGTGCCCACCCTGGAGACATCCTACCTGGCTCGAGCTGGCAAGAATGAGTTCCTCAACCTAGTCCCAGACATCGAGGAAATGAGGCCTGGGTCTGTGGTGTCCAAGAAGGGCTACCTGAGCTTCATGGAGCCGCGTTCCAACTCGTGGGTGAAGCACTTCGTGGTGGTACGCCGGCCCTACGTCTTCATCTACAACAACGACAAGGACCCAGTGGAAAGAGGCGTCTTGAACCTGTCCACTGCGCAGGTGGAGTACAGCGAGGACCAGCAGGCCATGCTGAAGCTGTATGTCATTGAGCGAGACCGTTTGTTGTTGCATCACTACGATAATGAAAGTTTAGTGGAACATTGTCTTGGTCCTCTCAGCTCAGGGCAGCAGCAGTACAacctgtgtttgtattttctcttgCAGACGCCAAACACATTTGCAGTGTGTACAAAGCATCGAGGAATTCTCCTGCAGGCTATCAATGATAAAGATATGAATGACTGGTTATATGCCTTTAACCCACTGCTAGCAGGAACAATAAGGTACAgtttcagtttccttttaaaGGGCCACCTTTCTATATCTGTCAAAGCTTGCAAGACGGCGTTCAGTGCAGCTGAAGAATTGAGAAATATCTTTCTAGTCTGTGGGGAATAA

Function

symbol description
kif1b Predicted to enable ATP hydrolysis activity; microtubule binding activity; and plus-end-directed microtubule motor activity. Involved in axonal transport and motor neuron axon guidance. Acts upstream of or within several processes, including macrophage differentiation; plasma membrane bounded cell projection organization; and posterior lateral line system development. Predicted to be located in cytoplasm. Predicted to be part of kinesin complex. Predicted to be active in several cellular components, including axon; dendrite; and microtubule. Is expressed in central nervous system; nervous system; neurons; and spinal cord. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2A1; carcinoma (multiple); multiple sclerosis; neuroblastoma; and pheochromocytoma. Orthologous to human KIF1B (kinesin family member 1B).

NR:

description
PREDICTED: kinesin-like protein KIF1B isoform X6

GO: NA

KEGG:

id description
K10392 KIF1; kinesin family member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002269 True 3630 mRNA 0.55 28 9661508 9692975

Neighbor

gene id symbol gene type direction distance location
AMCG00002270 pgd,LOC107716232,LOC107681986 coding downstream 10898 9643246 ~ 9650610 (-)
AMCG00002267 NA coding downstream 24242 9630130 ~ 9637266 (-)
AMCG00002271 NA coding downstream 31829 9628650 ~ 9629679 (-)
AMCG00002263 NA coding downstream 304538 9309416 ~ 9356970 (-)
AMCG00002259 NA coding downstream 452809 9200586 ~ 9208699 (-)
AMCG00002268 NA coding upstream 785 9693760 ~ 9725266 (-)
AMCG00002277 NA coding upstream 109333 9802308 ~ 9807298 (-)
AMCG00002280 NA coding upstream 284801 9977776 ~ 10006571 (-)
AMCG00002286 NA coding upstream 331444 10024419 ~ 10030406 (-)
AMCG00002285 NA coding upstream 373937 10066912 ~ 10076666 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding downstream 40036 9621028 ~ 9621472 (-)
G122037 NA non-coding downstream 373921 9283969 ~ 9287587 (-)
G122019 NA non-coding downstream 448079 9138447 ~ 9213429 (-)
G121935 NA non-coding downstream 643181 9018126 ~ 9018327 (-)
G121912 NA non-coding downstream 728345 8932163 ~ 8933163 (-)
G122131 NA non-coding upstream 155260 9848235 ~ 9851376 (-)
G122226 NA non-coding upstream 530238 10223213 ~ 10224982 (-)
G122302 NA non-coding upstream 1057436 10750411 ~ 10750781 (-)
G122319 NA non-coding upstream 1119211 10812186 ~ 10813876 (-)
G122376 NA non-coding upstream 1574589 11267564 ~ 11274527 (-)
AMCG00002265 NA other downstream 41381 9608750 ~ 9620127 (-)
AMCG00002223 NA other downstream 1822097 7826641 ~ 7839411 (-)
AMCG00002167 NA other downstream 3646115 5975725 ~ 6015393 (-)
G120993 NA other downstream 5441631 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 5874964 3784236 ~ 3786544 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 64450 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 137544 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 143943 9836918 ~ 9853075 (-)
AMCG00002288 NA other upstream 576914 10269889 ~ 10279984 (-)
AMCG00002301 NA other upstream 1144829 10837804 ~ 10847201 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_11685422_11713351 KIF1B coding CI01000001 null 11684972 ~ 11713486 (-)