AMCG00002270 (pgd,LOC107716232,LOC107681986)


Basic Information

Item Value
gene id AMCG00002270
gene name pgd,LOC107716232,LOC107681986
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9643246 ~ 9650610 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002270
AGCAGACATTGCCCTTATTGGCCTCGCTGTGATGGGCCAGAACCTGGTCTTGAACATGAACGACCATGGTTTTGTGGTGTGCGCCTTCAACAGGACAGTGTCTAAGGTCCAGGACTTCCTCCAGAACGAGGCCAAAGACACCAAGGTGGTAGGAGCGCAGTCCTTGGAGGACATGGTGTCCAAGCTGAAGAAGCCACGCCGCATTGTCCTGTTGGTGAAAGCTGGCCAGGCCGTGGATGACTTCATTGACAAACTGGTGCCTTTACTTGAACCAGGAGACATCATCATTGATGGAGGCAACTCTGAATACAGAGACACTACTCGTCGGTGCAAGAGCCTGAAGGACAAGGGCCTGCTGTTTGTGGGCAGCGGGGTGAGCGGGGGTGAGGAGGGGGCACGGTATGGACCCTCACTGATGCCCGGGGGACACAAGGAGGCCTGGCCACAtattaaagacattttccaGAGCATTGCTGCTAAAGTTGGAACAGGAGAGCCTTGTTGTGACTGGGTGGGCGATGAAGGTGCAGGTCACTTTGTGAAGATGGTGCACAATGGCATTGAATACGGGGACATGCAGCTCATCTGCGAGGCCTACCACCTGATGAAGGACGTCCTCAAGATGGACCACGATGAGATGGCCAAGGCATTTGATGACTGGAACAAGACAGAGCTGGACTCCTTCCTGATCGAGATCACCGCCAATATCCTGAAGTATAGGGACTCTGACGGGAGCCACTTACTGCCCAAAATAAAGGACTCCGCTGGCCAGAAAGGCACTGGGAAGTGGACAGCAATCTCTGCCCTGGAGTATGGCACCCCTGTCACTTTAATTGGTGAGGCTGTCTTTGCCAGGTGTCTGTCATCCCTGAAAGATGAAAGAGTGCAGGCCAGTAAAATCCTCAGCGGACCCCAGGGAGCGGTGTTTAAAGGGGACAAGGCTGGATTCCTGGAAGACATCCGCAAGgcTCTGTATGCCTCCAAGATAATCTCCTATGCCCAGGGATTCATGCTTCTTCGGCAGGCAGCCATAGAGTTTGGCTGGACTCTCAACTATGGAGCCATTGCACTCATGTGGAGGGGGGGCTGCATAATCAGGAGTGTTTTCCTGGGAAAGATCAAGGAAGCGTTTGACCGGGACTCTGAGCTGCAGAGCCTGCTACTCGACACCTTCTTTAGCAATGCAGTGCAGGACTGCCAGGAGTCGTGGCGTCGAGCCGTTAGCACAGGAGTCCAGCAGGGCATCCCCATGCCGTGCTTTACCACAGCGCTCTCCTTCTACGATGGTTACAGACACAACATGTTGCCAGCCAACCTCCTCCAGGCTCAGAGAGATTACTTTGGCGCACACACTTACGAGTTGCTGTCAAAACCTGGAAAATTCATCCACACAAACTGGACTGGCCACGGGGGAAACGTCTCCTCATCCTCCTACAATGCT

Function

symbol description
pgd Predicted to enable NADP binding activity and phosphogluconate dehydrogenase (decarboxylating) activity. Predicted to be involved in D-gluconate catabolic process and pentose-phosphate shunt, oxidative branch. Predicted to act upstream of or within D-gluconate metabolic process and pentose-phosphate shunt. Predicted to be active in cytosol. Is expressed in several structures, including axis; chordo neural hinge; digestive system; sensory system; and solid lens vesicle. Orthologous to human PGD (phosphogluconate dehydrogenase).

NR:

description
6-phosphogluconate dehydrogenase, decarboxylating

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0050661 NADP binding molecular_function
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity molecular_function

KEGG:

id description
K00033 PGD, gnd, gntZ; 6-phosphogluconate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002270 True 1441 mRNA 0.54 12 9643246 9650610

Neighbor

gene id symbol gene type direction distance location
AMCG00002267 NA coding downstream 5980 9630130 ~ 9637266 (-)
AMCG00002271 NA coding downstream 13567 9628650 ~ 9629679 (-)
AMCG00002263 NA coding downstream 286276 9309416 ~ 9356970 (-)
AMCG00002259 NA coding downstream 434547 9200586 ~ 9208699 (-)
AMCG00002260 NA coding downstream 449817 9193199 ~ 9193429 (-)
AMCG00002269 kif1b coding upstream 10898 9661508 ~ 9692975 (-)
AMCG00002268 NA coding upstream 43150 9693760 ~ 9725266 (-)
AMCG00002277 NA coding upstream 151698 9802308 ~ 9807298 (-)
AMCG00002280 NA coding upstream 327166 9977776 ~ 10006571 (-)
AMCG00002286 NA coding upstream 373809 10024419 ~ 10030406 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding downstream 21774 9621028 ~ 9621472 (-)
G122037 NA non-coding downstream 355659 9283969 ~ 9287587 (-)
G122019 NA non-coding downstream 429817 9138447 ~ 9213429 (-)
G121935 NA non-coding downstream 624919 9018126 ~ 9018327 (-)
G121912 NA non-coding downstream 710083 8932163 ~ 8933163 (-)
G122131 NA non-coding upstream 197625 9848235 ~ 9851376 (-)
G122226 NA non-coding upstream 572603 10223213 ~ 10224982 (-)
G122302 NA non-coding upstream 1099801 10750411 ~ 10750781 (-)
G122319 NA non-coding upstream 1161576 10812186 ~ 10813876 (-)
G122376 NA non-coding upstream 1616954 11267564 ~ 11274527 (-)
AMCG00002265 NA other downstream 23119 9608750 ~ 9620127 (-)
AMCG00002223 NA other downstream 1803835 7826641 ~ 7839411 (-)
AMCG00002167 NA other downstream 3627853 5975725 ~ 6015393 (-)
G120993 NA other downstream 5423369 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 5856702 3784236 ~ 3786544 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 106815 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 179909 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 186308 9836918 ~ 9853075 (-)
AMCG00002288 NA other upstream 619279 10269889 ~ 10279984 (-)
AMCG00002301 NA other upstream 1187194 10837804 ~ 10847201 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022435 pgd coding NC_007134.7 CM002907.2 29381441 ~ 29394505 (-)