AMCG00002377


Basic Information

Item Value
gene id AMCG00002377
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12099324 ~ 12100920 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002377
ATGGCAGCCCTGGCGATGGCGGTGGTGTCGTGGGCGACATGGTGCCCATGCCCAGGCTGCCCCCGGATACAGATCCCAGGCGGGGTAGATGCAGAGAAACAACGGGCCTGCCTGGTGCGACCCTGGAGGTTTGGTGTCGGCAGAGACGCTCTCAGGTACAGGTCTCTGATGGCTGACAGTCCTGCGCAGTGCATCTCCACCCTGTCGAAAGTGGCTCTGTTTCTCTCCGGCCTGCGCTCGGCTCGTCGGCTGTTCAAGGATCACAGAGCACCTGCAGTGGGGCTGTTCCTGTTGGCCTGCAGTGCTGCTGTGGGGGTGCTGCCCGGCCCATTGCTGGCAGGGCTTCAGCGCGACGTGGAGTGGGCCGGCTATGTTGTGGGCCCGGCGCTGGTCTCATTCGGTTACCTGTGGCTGAGCGAGGACCGTGGCACAGCCTACATGCTGCTGGGGGGCCTAGCCCTGCTGGCTGCACTCCGTGACCGGCTGTCGGAGGAGACCGTGGCCGTGCTGTCGCGCTGTGTGGCTCTGTCCTCGCTGGCCAGCTCCCTGACGGTCTGCCTCTTCACCGCCAGCTTTGCCGGTGCCCTGGGCAGCCTGGCTCTCAGTCTGCCTGCCCTGCTGGGCCCTGAGGTCAGAGATCTGGGTGTTATACCCTTGTTCACAGTGAAGACCTCGGAGGCCATTCTGAGCTGCCTGATGTCACTGGGCAGCCTGGCCACAGAACGAGCACTGAGATGGTACCAGCTGGAGCTGAAGGGGGGATGCTGA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002377 True 768 mRNA 0.64 4 12099324 12100920

Neighbor

gene id symbol gene type direction distance location
AMCG00002373 LOC101076725,LOC106573767,LOC106598349,LOC106598644,LOC106597130 coding downstream 2682 12082111 ~ 12096642 (-)
AMCG00002367 NA coding downstream 38772 12055641 ~ 12060552 (-)
AMCG00002359 NA coding downstream 181224 11913110 ~ 11918100 (-)
AMCG00002358 NA coding downstream 186309 11905910 ~ 11913015 (-)
AMCG00002357 capzb,LOC106583096,LOC106565651,LOC105897928 coding downstream 206625 11882073 ~ 11892699 (-)
AMCG00002375 NA coding upstream 23278 12124198 ~ 12139756 (-)
AMCG00002376 NA coding upstream 39085 12140005 ~ 12142344 (-)
AMCG00002374 NA coding upstream 44226 12145146 ~ 12171681 (-)
AMCG00002382 smarcc1,LOC106605342,LOC106581105 coding upstream 84114 12185034 ~ 12203026 (-)
AMCG00002384 NA coding upstream 147227 12248147 ~ 12248946 (-)
G122726 NA non-coding downstream 54305 12043315 ~ 12045019 (-)
G122621 NA non-coding downstream 235268 11862903 ~ 11864056 (-)
G122636 NA non-coding downstream 239999 11857391 ~ 11859325 (-)
G122633 NA non-coding downstream 251132 11847081 ~ 11848192 (-)
G122632 NA non-coding downstream 253653 11844392 ~ 11845671 (-)
G122801 NA non-coding upstream 95000 12195920 ~ 12243914 (-)
G122858 NA non-coding upstream 899921 13000841 ~ 13005335 (-)
G122869 NA non-coding upstream 951106 13052026 ~ 13052390 (-)
G122877 NA non-coding upstream 966301 13067221 ~ 13067627 (-)
G122879 NA non-coding upstream 967914 13068834 ~ 13069238 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 92972 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 226462 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 244433 11848470 ~ 11854891 (-)
G122597 NA other downstream 365000 11731617 ~ 11734324 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 414235 11647911 ~ 11685089 (-)
G122862 NA other upstream 927277 13028197 ~ 13029406 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 1548307 13649227 ~ 13654247 (-)
G123263 NA other upstream 2840340 14941260 ~ 14946311 (-)
G123585 NA other upstream 4735236 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 4857242 16958162 ~ 16974301 (-)

Expression


Co-expression Network