RNA id: AMCG00002377


Basic Information

Item Value
RNA id AMCG00002377
length 768
RNA type mRNA
GC content 0.64
exon number 4
gene id AMCG00002377
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12099324 ~ 12100920 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCCCTGGCGATGGCGGTGGTGTCGTGGGCGACATGGTGCCCATGCCCAGGCTGCCCCCGGATACAGATCCCAGGCGGGGTAGATGCAGAGAAACAACGGGCCTGCCTGGTGCGACCCTGGAGGTTTGGTGTCGGCAGAGACGCTCTCAGGTACAGGTCTCTGATGGCTGACAGTCCTGCGCAGTGCATCTCCACCCTGTCGAAAGTGGCTCTGTTTCTCTCCGGCCTGCGCTCGGCTCGTCGGCTGTTCAAGGATCACAGAGCACCTGCAGTGGGGCTGTTCCTGTTGGCCTGCAGTGCTGCTGTGGGGGTGCTGCCCGGCCCATTGCTGGCAGGGCTTCAGCGCGACGTGGAGTGGGCCGGCTATGTTGTGGGCCCGGCGCTGGTCTCATTCGGTTACCTGTGGCTGAGCGAGGACCGTGGCACAGCCTACATGCTGCTGGGGGGCCTAGCCCTGCTGGCTGCACTCCGTGACCGGCTGTCGGAGGAGACCGTGGCCGTGCTGTCGCGCTGTGTGGCTCTGTCCTCGCTGGCCAGCTCCCTGACGGTCTGCCTCTTCACCGCCAGCTTTGCCGGTGCCCTGGGCAGCCTGGCTCTCAGTCTGCCTGCCCTGCTGGGCCCTGAGGTCAGAGATCTGGGTGTTATACCCTTGTTCACAGTGAAGACCTCGGAGGCCATTCTGAGCTGCCTGATGTCACTGGGCAGCCTGGCCACAGAACGAGCACTGAGATGGTACCAGCTGGAGCTGAAGGGGGGATGCTGA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153878 lncRNA downstream 54305 12043315 ~ 12045019 (-) True G122726
TU153768 lncRNA downstream 227945 11869607 ~ 11871379 (-) True AMCG00002351
TU153748 lncRNA downstream 235268 11862903 ~ 11864056 (-) True G122621
TU153766 lncRNA downstream 239999 11857391 ~ 11859325 (-) True G122636
TU153762 lncRNA downstream 251132 11847081 ~ 11848192 (-) True G122633
TU153975 lncRNA upstream 95000 12195920 ~ 12243914 (-) False G122801
TU153974 lncRNA upstream 141201 12242121 ~ 12243914 (-) True G122801
TU154042 lncRNA upstream 899921 13000841 ~ 13005335 (-) True G122858
TU154056 lncRNA upstream 951106 13052026 ~ 13052390 (-) True G122869
TU154065 lncRNA upstream 966301 13067221 ~ 13067627 (-) True G122877
AMCG00002373 mRNA downstream 2682 12082111 ~ 12096642 (-) True AMCG00002373
AMCG00002367 mRNA downstream 38772 12055641 ~ 12060552 (-) True AMCG00002367
AMCG00002368 mRNA downstream 92972 11996026 ~ 12006352 (-) False AMCG00002368
AMCG00002359 mRNA downstream 181224 11913110 ~ 11918100 (-) True AMCG00002359
AMCG00002358 mRNA downstream 186309 11905910 ~ 11913015 (-) True AMCG00002358
AMCG00002375 mRNA upstream 23278 12124198 ~ 12139756 (-) True AMCG00002375
AMCG00002376 mRNA upstream 39085 12140005 ~ 12142344 (-) True AMCG00002376
AMCG00002374 mRNA upstream 44226 12145146 ~ 12171681 (-) True AMCG00002374
AMCG00002382 mRNA upstream 84114 12185034 ~ 12203026 (-) True AMCG00002382
AMCG00002384 mRNA upstream 147227 12248147 ~ 12248946 (-) True AMCG00002384
TU153859 other downstream 92973 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 226462 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 244433 11848470 ~ 11854891 (-) True AMCG00002350
TU153720 other downstream 365000 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 414235 11667755 ~ 11685089 (-) False AMCG00002327
TU154046 other upstream 927277 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 927277 13028197 ~ 13029406 (-) True G122862
TU154299 other upstream 1548308 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 2840340 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 4735236 16836156 ~ 16839722 (-) True G123585

Expression Profile