AMCG00002536 (trim71,LOC107657583,LOC107551222,LOC107723073,LOC107601676,LOC107704101,LOC107751884)


Basic Information

Item Value
gene id AMCG00002536
gene name trim71,LOC107657583,LOC107551222,LOC107723073,LOC107601676,LOC107704101,LOC107751884
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18172131 ~ 18182627 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002536
GTGTTTCGGTTCTTCTGTGACACCTGCTCGGTGCCTATCTGTAGGGAGTGCAGCATGGGAAGACATGTCGGCCACAGTTTCATCTACCTCCAAGATGCCGTCCAGGACTCCAGGGCCATCACCATCCAGCTGCTGGCAGACGCACAGCAGGGCAGGCAGGCTGTTCAGcTAAGCATCGAGAAAGCCCAAGCAATTGCTGAACAGGTCGAGATAAAGGCCAAGGTTGTACAAACTGAAGTAAAGGCCGTCACATCGCGACACAAGAAGGCCCTGGAAGAGCGGGAATGTGAGCTTTTGTGGAAGGTTGAGAAGATCCGCCAGGTGAAAGCCAAGTCCCTGTACCTGCAGGTGGAGAAACTGCACCAGAACCTGAACAAGCTGGACAACACCATCACGGCCGTGCAGCAGGTCCTCGAGGATGGCCGGAACATCGACATCCTGCTGGCCCGGGAGCGCATGCTGACTCAGATCCAGGAGCTTAAAGCTCTGAGAGGCATGCTGCAACCCCAAGAGGACGATCGCATTATGTTTACCCCCCCAGACCAGGCGCTCTACATTGCCATCAAGTCCATGGGACTCATCAGCAGTGGCGCTTTTGCTCCGGTCACCAAAGCCAAAGGAGAGGGGCTTAAGAGGGCCTTGCAGGGCAAAGTGGCATCCTTCACAGTTGTGGGCTATGATCATGACGGAGAGCCCAGGCTATCCGGCGGAGATGCCGTCTCTGCAGTGGCGATGAGCCCAGATGGAAATCTTTTTGTGGCCGATGTGTCTGACCATCAAAACGGCACGTACACAGTCAGTTACCTGCCCAAGATGGAGGGTGAGCATCTTGTCTCGGTGCTCATCTGCAACCAGCACATCGAAGGCAGCCCTTTCAAAGTGCTAGTCAAGTCAGGGCGCAGCTATGGGGGCGTGGGCTTGCCAATAGCCTCGTTtgggggagagggagacggagacGGCAAGCTTTGCCGGCCCTGGGGTATCTGTGTGGACAAGGAAGGCTACGTGGTAGTGGCTGACCGCAGCAACAACCGTGTGCAGATCTTCAAGCCCTGCGGCACCTTCCACCACAAGTTCGGGACTCTGGGATCCAGGCCTGGCCAGTTTGATCGACCCGCCGGTGTGGCCTGTGACATCCAGAGGAGAATCATTGTGGCTGACAAGGACAATCACCGCATTCAGGTCTTCACCTTTGAGGGACAGTTCCTCCTGAAGTTCGGGGAGAAGGGAACGAAGAACGGCCAATTCAACTACCCTTGGGATGTGGCAGTCAATGCGGAAGGCAAGATCCTGGTCTCCGACACACGCAACCATCGCATCCAGCTCTTCGGACCCGACGGAGTCTTCTTGAACAAGTACGGCTTTGAGGGTGCCCTCTGGAAGCATTTTGACTCCCCCCGGGGAGTGGCTTTCAACCACGAGGGTCACTTGGTAGTGACGGACTTTAACAATCATCGTCTCCTAGTCATCCGGCCCGACTGTCAGTCTGCCCGTTTCCTGGGTTCAGAGGGCACGGGCAACGGGCAGTTCCTGCGGCCACAAGGGGTCGCCGTGGACCAGGAGGGCCGCATTATTGTGGCTGACTCTCGTAACCACCGGGTCCAGGTATTTGAGCCCAATGGCAACTTCTTATGCAAATTCGGGACTCAGGGTAATGGCTTCGGGCAGATGGATCGCCCATCGGGTATAGCCATTACGCCTGACGGTATGATTGTCGTTGTTGACTTTGGAAATAATAGAATCCTAGTGTTCTGA

Function

symbol description
trim71 Predicted to enable miRNA binding activity; translation repressor activity; and ubiquitin protein ligase activity. Acts upstream of or within embryonic body morphogenesis. Predicted to be located in P-body. Is expressed in several structures, including nervous system; neural tube; pectoral fin musculature; polster; and solid lens vesicle. Orthologous to human TRIM71 (tripartite motif containing 71).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM71-like

GO:

id name namespace
GO:0072089 stem cell proliferation biological_process
GO:2000177 regulation of neural precursor cell proliferation biological_process
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0000082 G1/S transition of mitotic cell cycle biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0060964 regulation of gene silencing by miRNA biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0021915 neural tube development biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0010586 miRNA metabolic process biological_process
GO:0000932 P-body cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0035198 miRNA binding molecular_function

KEGG:

id description
K12035 TRIM71; tripartite motif-containing protein 71

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002536 True 1755 mRNA 0.56 3 18172131 18182627

Neighbor

gene id symbol gene type direction distance location
AMCG00002532 NA coding downstream 110066 18058532 ~ 18062065 (-)
AMCG00002531 NA coding downstream 269321 17876005 ~ 17902810 (-)
AMCG00002530 NA coding downstream 315063 17838579 ~ 17857068 (-)
AMCG00002523 NA coding downstream 486834 17678022 ~ 17685297 (-)
AMCG00002520 LOC107710314 coding downstream 565182 17598649 ~ 17606949 (-)
AMCG00002539 trim71 coding upstream 20750 18203377 ~ 18204483 (-)
AMCG00002537 NA coding upstream 33168 18215795 ~ 18224850 (-)
AMCG00002538 NA coding upstream 44341 18226968 ~ 18241221 (-)
AMCG00002542 NA coding upstream 137512 18320139 ~ 18335125 (-)
AMCG00002541 snrk,snrka,LOC107551216,LOC107723077,LOC107601674,LOC107657578 coding upstream 201193 18383820 ~ 18389641 (-)
G123845 NA non-coding downstream 119799 18051097 ~ 18052332 (-)
G123824 ctnnb1 non-coding downstream 356665 17811518 ~ 17815466 (-)
G123788 NA non-coding downstream 497021 17660067 ~ 17675110 (-)
G123705 NA non-coding downstream 933587 17234370 ~ 17238544 (-)
G123646 NA non-coding downstream 1096582 17075312 ~ 17075549 (-)
G123876 NA non-coding upstream 23041 18205668 ~ 18206132 (-)
G123926 NA non-coding upstream 286607 18469234 ~ 18469607 (-)
G123961 NA non-coding upstream 402082 18584709 ~ 18585930 (-)
G123981 NA non-coding upstream 599518 18782145 ~ 18782366 (-)
G124068 NA non-coding upstream 1101251 19283878 ~ 19284293 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 130558 17933464 ~ 18041573 (-)
G123829 NA other downstream 182666 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 465842 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 1197830 16958162 ~ 16974301 (-)
G123585 NA other downstream 1332409 16836156 ~ 16839722 (-)
AMCG00002584 NA other upstream 3464428 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 3718665 21901292 ~ 21902597 (-)
G124719 NA other upstream 4903367 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 4999294 23181921 ~ 23192656 (-)
G124829 NA other upstream 6078938 24261565 ~ 24261823 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010439 trim71 coding NC_007127.7 CM002900.2 7742658 ~ 7793457 (-)
grasscarp (Ctenopharyngodon idella) CI01000016_10600154_10633808 TRIM71 coding CI01000016 null 10599202 ~ 10633808 (-)