AMCG00002990


Basic Information

Item Value
gene id AMCG00002990
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8641915 ~ 8642438 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002990
ATGCTAGCTATGGCCGGTGGCAACAGCAGTATAATGAGTAGTAATATCAATAGTAATATCAATCCGGACTCATCCTCGGTGTACATGTCCAAGATGGATGCAGTGATCATCCCTTACTCCGCAGACGTGCCCTGTGACAGCAATGGGCAGCGCATGTGGTGGGCTTTCCTCGCCTCCTCCATGGTGACTTTCTTCGGGGGGCTCTTTATCATTCTGCTGTGGAGGACCCTCAAGTACCTGTGGACTGTGTGCTGCCACTGCAACATCAAAAGCAAGACCGCCCTTCACTGTAAAATAATCTTAACAGGCAGCCCAATCCCCCACTAA

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002990 True 327 mRNA 0.50 2 8641915 8642438

Neighbor

gene id symbol gene type direction distance location
AMCG00002989 dlg5 coding upstream 6638 8584494 ~ 8635277 (+)
AMCG00002984 anx11,LOC100702381,LOC101468000,LOC102303799,LOC102214080,LOC102778943 coding upstream 77299 8553579 ~ 8564616 (+)
AMCG00002983 zmiz1,LOC103381918 coding upstream 154122 8476692 ~ 8487793 (+)
AMCG00002977 rps24,LOC102780737 coding upstream 407515 8229647 ~ 8234400 (+)
AMCG00002976 NA coding upstream 428820 8206391 ~ 8213095 (+)
AMCG00002991 kcnma1,LOC102213110,LOC106949528,LOC106919544,LOC107676421,LOC102314531,LOC106517014,LOC108243866 coding downstream 97300 8739738 ~ 8770076 (+)
AMCG00002992 LOC108263740,LOC103386992,LOC106613356 coding downstream 152369 8794807 ~ 8817964 (+)
AMCG00002994 znf503,LOC107708443,LOC103355656,LOC102798683 coding downstream 511526 9153964 ~ 9156135 (+)
AMCG00002995 NA coding downstream 626479 9268917 ~ 9273158 (+)
AMCG00002997 NA coding downstream 674293 9316731 ~ 9325141 (+)
G139919 zcchc24,LOC106608383,LOC107564348 non-coding upstream 98632 8542727 ~ 8543283 (+)
G139918 LOC105903367,LOC108245402 non-coding upstream 105541 8536080 ~ 8536374 (+)
G139917 NA non-coding upstream 133432 8507877 ~ 8508483 (+)
G139916 NA non-coding upstream 134812 8499384 ~ 8507103 (+)
G139915 NA non-coding upstream 142689 8498014 ~ 8499226 (+)
G139995 NA non-coding downstream 207741 8850179 ~ 8851686 (+)
G139997 NA non-coding downstream 278030 8920468 ~ 8920730 (+)
G139998 NA non-coding downstream 290312 8932750 ~ 8932969 (+)
G139999 c3h10orf11,c13h10orf11,LOC107690203,LOC107747465,LOC107582503,LOC107678567 non-coding downstream 316301 8958739 ~ 8960425 (+)
G140002 NA non-coding downstream 503863 9146301 ~ 9146572 (+)
AMCG00002982 NA other upstream 144950 8493005 ~ 8496965 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 597502 8037577 ~ 8044413 (+)
G139784 NA other upstream 715083 7923182 ~ 7926832 (+)
AMCG00002960 NA other upstream 721007 7909252 ~ 7920908 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other upstream 1262428 7376687 ~ 7379487 (+)
AMCG00002996 NA other downstream 594302 9236740 ~ 9244099 (+)
AMCG00002998 NA other downstream 657873 9300311 ~ 9316633 (+)
G140030 NA other downstream 683050 9325488 ~ 9330464 (+)
G140189 NA other downstream 1135812 9778250 ~ 9780452 (+)
AMCG00003019 NA other downstream 1202338 9844776 ~ 9853453 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_06381088_06383136 NA coding CI01180000 null 6380579 ~ 6383356 (-)
mexican tetra (Astyanax mexicanus) G98429 NA non-coding NC_035907.1 CM008310.1 8733971 ~ 8734240 (+)