G139918 (LOC105903367,LOC108245402)


Basic Information

Item Value
gene id G139918
gene name LOC105903367,LOC108245402
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8536080 ~ 8536374 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU175985
GGACAGTCTTTGATGTAGTGTCCCTTGTTAAAGCATAGATGGCACAGGTAATTTGGAGGGGGCCTTTTGCTGGGTTTCCGTGGCtcggaggagagagacaggtcAGAGAAATGGTCCGTCAGGGAGCTCAGACCGTCCACAATGTTGTTGAGGGAGCCATAGGGAGAGGCACTTTTGTACAGGCTGTTATTTAAGGCCTGCAAAAGAGAAACAACCAggtgttaaaaatgtaacttgAATATAAACTGACCATAAATAAGTAGTTAACTTTATTGGTTACCCTGAGGTACTAAAA

Function

NR:

description
PREDICTED: zinc finger CCHC domain-containing protein 24-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175985 True 295 lncRNA 0.44 1 8536080 8536374

Neighbor

gene id symbol gene type direction distance location
AMCG00002983 zmiz1,LOC103381918 coding upstream 48287 8476692 ~ 8487793 (+)
AMCG00002977 rps24,LOC102780737 coding upstream 301680 8229647 ~ 8234400 (+)
AMCG00002976 NA coding upstream 322985 8206391 ~ 8213095 (+)
AMCG00002973 LOC107595167 coding upstream 363576 8136740 ~ 8172504 (+)
AMCG00002974 NA coding upstream 454286 8070984 ~ 8081794 (+)
AMCG00002984 anx11,LOC100702381,LOC101468000,LOC102303799,LOC102214080,LOC102778943 coding downstream 17205 8553579 ~ 8564616 (+)
AMCG00002989 dlg5 coding downstream 48120 8584494 ~ 8635277 (+)
AMCG00002990 NA coding downstream 105541 8641915 ~ 8642438 (+)
AMCG00002991 kcnma1,LOC102213110,LOC106949528,LOC106919544,LOC107676421,LOC102314531,LOC106517014,LOC108243866 coding downstream 203364 8739738 ~ 8770076 (+)
AMCG00002992 LOC108263740,LOC103386992,LOC106613356 coding downstream 258433 8794807 ~ 8817964 (+)
G139917 NA non-coding upstream 27597 8507877 ~ 8508483 (+)
G139916 NA non-coding upstream 28977 8499384 ~ 8507103 (+)
G139915 NA non-coding upstream 36854 8498014 ~ 8499226 (+)
G139906 NA non-coding upstream 255951 8279656 ~ 8280129 (+)
G139880 NA non-coding upstream 354546 8181305 ~ 8181534 (+)
G139919 zcchc24,LOC106608383,LOC107564348 non-coding downstream 6353 8542727 ~ 8543283 (+)
G139995 NA non-coding downstream 313805 8850179 ~ 8851686 (+)
G139997 NA non-coding downstream 384094 8920468 ~ 8920730 (+)
G139998 NA non-coding downstream 396376 8932750 ~ 8932969 (+)
G139999 c3h10orf11,c13h10orf11,LOC107690203,LOC107747465,LOC107582503,LOC107678567 non-coding downstream 422365 8958739 ~ 8960425 (+)
AMCG00002982 NA other upstream 39115 8493005 ~ 8496965 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 491667 8037577 ~ 8044413 (+)
G139784 NA other upstream 609248 7923182 ~ 7926832 (+)
AMCG00002960 NA other upstream 615172 7909252 ~ 7920908 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other upstream 1156593 7376687 ~ 7379487 (+)
AMCG00002996 NA other downstream 700366 9236740 ~ 9244099 (+)
AMCG00002998 NA other downstream 763937 9300311 ~ 9316633 (+)
G140030 NA other downstream 789114 9325488 ~ 9330464 (+)
G140189 NA other downstream 1241876 9778250 ~ 9780452 (+)
AMCG00003019 NA other downstream 1308402 9844776 ~ 9853453 (+)

Expression


Co-expression Network