G139880


Basic Information

Item Value
gene id G139880
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8181305 ~ 8181534 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU175921
cagttataaaaacataggacactaaagagacctttctactgactctgaaaaacaccaaaagaaagatgcccagggtccctgctcatctgcgtgaacgtgccttaggcatgctgcaaggaggcatgaggactgcagatgtggccagggcaataaattgcaatgcaTGTACTGTGAGATGCCTAAGACAgcactacagggagacaggaaggacagctgatcgtccttgcagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175921 True 230 lncRNA 0.48 1 8181305 8181534

Neighbor

gene id symbol gene type direction distance location
AMCG00002973 LOC107595167 coding upstream 8801 8136740 ~ 8172504 (+)
AMCG00002974 NA coding upstream 99511 8070984 ~ 8081794 (+)
AMCG00002966 spock2,LOC108443083 coding upstream 183280 7955216 ~ 7998025 (+)
AMCG00002961 NA coding upstream 234781 7938432 ~ 7946524 (+)
AMCG00002954 NA coding upstream 317884 7847978 ~ 7863421 (+)
AMCG00002976 NA coding downstream 24857 8206391 ~ 8213095 (+)
AMCG00002977 rps24,LOC102780737 coding downstream 48113 8229647 ~ 8234400 (+)
AMCG00002983 zmiz1,LOC103381918 coding downstream 295158 8476692 ~ 8487793 (+)
AMCG00002984 anx11,LOC100702381,LOC101468000,LOC102303799,LOC102214080,LOC102778943 coding downstream 372045 8553579 ~ 8564616 (+)
AMCG00002989 dlg5 coding downstream 402960 8584494 ~ 8635277 (+)
G139850 NA non-coding upstream 159904 8020020 ~ 8021401 (+)
G139838 NA non-coding upstream 175855 8003904 ~ 8005450 (+)
G139837 NA non-coding upstream 177660 8003315 ~ 8003645 (+)
G139836 NA non-coding upstream 178248 8002802 ~ 8003057 (+)
G139832 NA non-coding upstream 182046 7998213 ~ 7999259 (+)
G139906 NA non-coding downstream 98122 8279656 ~ 8280129 (+)
G139915 NA non-coding downstream 316480 8498014 ~ 8499226 (+)
G139916 NA non-coding downstream 317850 8499384 ~ 8507103 (+)
G139917 NA non-coding downstream 326343 8507877 ~ 8508483 (+)
G139918 LOC105903367,LOC108245402 non-coding downstream 354546 8536080 ~ 8536374 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 136892 8037577 ~ 8044413 (+)
G139784 NA other upstream 254473 7923182 ~ 7926832 (+)
AMCG00002960 NA other upstream 260397 7909252 ~ 7920908 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other upstream 801818 7376687 ~ 7379487 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other upstream 1107767 7066855 ~ 7073538 (+)
AMCG00002982 NA other downstream 311471 8493005 ~ 8496965 (+)
AMCG00002996 NA other downstream 1055206 9236740 ~ 9244099 (+)
AMCG00002998 NA other downstream 1118777 9300311 ~ 9316633 (+)
G140030 NA other downstream 1143954 9325488 ~ 9330464 (+)
G140189 NA other downstream 1596716 9778250 ~ 9780452 (+)

Expression


Co-expression Network