AMCG00003571 (foxa2,LOC105909438)


Basic Information

Item Value
gene id AMCG00003571
gene name foxa2,LOC105909438
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9892778 ~ 9894988 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003571
CAGCCTTTCCAACCAGGCGCCAACGTCATTGCAACTCCTGGCATCATCAGCAGCTTTGGAGACACTACTGTCTGAAATCCACACATGCATCAGTCCCTGCCTAGCAAGCAGACCAACGTCCTGGGCAACCCGTGGTCCGCAATCTGGTTTTAGGGCACTTTTTTCCATCTTCTCCAGAGAAGCTGCTGACCAACCGTGTGCGCTGCCTCCACGATGTTGGGCGCAGTTAAAATGGAAGGACACGAGCATGCAGACTGGAGCACCTATTACGCAGAGCCCGAGtgttACACCTCTGTTGGCAACATGAACGCGGGACTTGGGATGAACACCATGAACACATACATGAGCATGTCAGGCATGAGCACCACAGCCAACATGACAGCGAGCTCTATGAACATGTCCTATGTGAACACTGGCATGAGCCCCTCCATGACCGGGATGTCCCCGGGTGCAGGGGCCATGAACGGCATGGGCGCCGGGATGGCCGGCATGAGCGCGGCGCTGAGCCCGAGCATGAGCCCCATGACCGCCCAGCCGCCCTCCATGAACGCCTTATCCTCGTACACCAACATGAATGCAATGAGCCCCATGAAGACCTCTGAGGGTGGATCTAACAGTAGCTCGGAAAGCTGCAACGGCAACGAGTCCCCGCATTCCCACACATCCTCCTCAAACGAGCAGAAGAGGTCAGAGATGAAGTCCGGCCAGGCTTTGAGCCCCGCACACCCGACCTCCCCAACCTCTCAGGCACAGCATCTAATGTCGCAGCATCACTCTGTCCTGGCACACGACGCGCACCTGAAGCCGGAGCACCACTACTCTTTCAACCACCCTTTCTCTATCAATAACCTCATGTCTTCGGAGCAGCAGCACCACAAAATGGACCTAAAGACTTATGAGCAGGTGATGCACTATTCGGGATATGGGTCTCCCATGGCAGGAGCTTTATCCATGGGCTCCATGAGCAGCAAAGCGGGCTTAGAGTCCTCGCCAATCTCCAGTGACACGTCTTACTACCAAGGTGTGTATTCTAGACCTATCATGAACTCTACCTAA

Function

symbol description
foxa2 Enables transcription cis-regulatory region binding activity. Acts upstream of or within axial mesoderm morphogenesis; endoderm development; and nervous system development. Predicted to be located in nucleus. Is expressed in several structures, including central nervous system; digestive system; endoderm; mesoderm; and swim bladder. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human FOXA2 (forkhead box A2).

NR:

description
PREDICTED: hepatocyte nuclear factor 3-beta

GO:

id name namespace
GO:0032289 central nervous system myelin formation biological_process
GO:0007492 endoderm development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0033504 floor plate development biological_process
GO:0048319 axial mesoderm morphogenesis biological_process
GO:0042593 glucose homeostasis biological_process
GO:0007389 pattern specification process biological_process
GO:0048665 neuron fate specification biological_process
GO:0010817 regulation of hormone levels biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007418 ventral midline development biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0021779 oligodendrocyte cell fate commitment biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K08035 FOXA2, HNF3B; forkhead box protein A2, hepatocyte nuclear factor 3-beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003571 True 1056 mRNA 0.55 3 9892778 9894988

Neighbor

gene id symbol gene type direction distance location
AMCG00003568 LOC104960473 coding upstream 16935 9866100 ~ 9875843 (+)
AMCG00003569 prkd3,LOC101070414,LOC105015789 coding upstream 39106 9820927 ~ 9853672 (+)
AMCG00003562 NA coding upstream 118681 9760860 ~ 9774097 (+)
AMCG00003558 NA coding upstream 352697 9538315 ~ 9540081 (+)
AMCG00003556 tfb1m,LOC106610789 coding upstream 368333 9521395 ~ 9524445 (+)
AMCG00003575 nkx2.2a,LOC103359019,LOC101157822,LOC101466937,LOC107392558 coding downstream 284354 10179342 ~ 10181960 (+)
AMCG00003576 nkx2.1a,LOC105015794,LOC106610802,LOC102798947,LOC108428605,LOC100709876,LOC101467433 coding downstream 335133 10230121 ~ 10231671 (+)
AMCG00003580 NA coding downstream 580849 10475837 ~ 10495920 (+)
AMCG00003581 ralgapa2 coding downstream 611570 10506558 ~ 10532085 (+)
AMCG00003583 crnkl1,LOC106607683,LOC106571265 coding downstream 722569 10617557 ~ 10623372 (+)
G1574 NA non-coding upstream 189300 9700557 ~ 9703478 (+)
G1430 ywhaqb,ywhaq,LOC105896734,LOC108436740,LOC107733143,LOC107674035,LOC107752793 non-coding upstream 865146 9009297 ~ 9027632 (+)
G1375 NA non-coding upstream 1048696 8843827 ~ 8844082 (+)
G1347 NA non-coding upstream 1192224 8699466 ~ 8700554 (+)
G1343 NA non-coding upstream 1225851 8661032 ~ 8666927 (+)
G1706 NA non-coding downstream 341868 10236856 ~ 10238261 (+)
G1747 ralgapa2 non-coding downstream 536676 10431664 ~ 10457765 (+)
G1855 NA non-coding downstream 1155163 11050151 ~ 11050644 (+)
G1891 NA non-coding downstream 1332971 11227959 ~ 11228275 (+)
G1902 NA non-coding downstream 1436051 11331039 ~ 11403029 (+)
AMCG00003570 NA other upstream 111022 9777508 ~ 9781756 (+)
AMCG00003551 NA other upstream 629310 9255828 ~ 9263468 (+)
AMCG00003544 NA other upstream 786013 9075890 ~ 9106765 (+)
AMCG00003541 asap2,LOC106566627 other upstream 951027 8900456 ~ 8941751 (+)
AMCG00003534 id2,LOC106566577 other upstream 1240308 8649125 ~ 8652470 (+)
AMCG00003604 NA other downstream 1566675 11461663 ~ 11482931 (+)
AMCG00003606 NA other downstream 1595197 11490185 ~ 11491597 (+)
G1989 cnr1,LOC104936193 other downstream 1678743 11573731 ~ 11577329 (+)
AMCG00003614 NA other downstream 1830095 11725083 ~ 11729991 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other downstream 3007578 12902566 ~ 12917002 (+)

Expression


Co-expression Network